LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g01094	ATGAAGCGGGGAAGAGGAGAGAGCATGGGGGAATCCACTTCTAGGGTTTCTCCCTCTCTTCAGCACCCCACAGCTGGCATCATCAAGCGACTTCGCCTCGAGAACTTCATGTGTCATTCCAAGCTCGAGACTGAGTTCGGGAGCCATGTCAATTTCATCACGGGCCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTCTGTGTTGCATTTGGCTGTCGGGCCAAAGGAACTCAAAGAGCTTCCTCTTTGAAGGATTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTCATGTTATCAATGTAGAGCGTAGGATATCTGAATCCGCAAGTTCTACTACATTGAAAGATCACCAAGGAAGGAAAGTTGTTAGTCGAAAAGCAGATCTTCTAGAAATCGTTGAACATTTTAATATTGATGTGGAGAATCCATGTGTAATTATGACTCAAGACAAAAGCAGGGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTGCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTTCAAGGAAATTACTACCGCATATCAAATAATTGAAGAGTTAGAGGCTTCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAACATGGAACATGTTGAACAAATATCCATACAGATTCAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATATAAAGATTGAAAAGTTGAAGAACCGGATACCGACCTGCCAAGCTAAGATTGATCAACAGCTGCATTTGGTTGAAAAGTTGAAGGAAAGCTGCTCCAAGAAGAAGGATGAAATTGCAAGAATGTTGGAGAAGACATCACAAGTTAAGCAAATGAAGGAAAATTTAAATCAATCTGTGTACATGGCAAAGAAAGAGGCATATGAGCTTGAGCGAGACTGCAAAAGCAAAACTAACAACGTACAGAAGATGGTACGGCAACTTAAAATGCTTGAACAACAAGTACAGGATATTCGCGAGCAGCATGTAAAAAATACTCAGGCTGAAGAATCTAATGTGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCGGAGTTAAAGCTGAAGAGATTGAAAGAGGAAGAAGTGTCTTTAATGGAGAGCATTCGTAGGCAAAATGACGAAATCCAAAAGATAGCTGATAAGATTCACGATCATGAAAAAAATCAACACGCTATCATGTGTCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGATTACTGTTTTTGGAGGAGCCAAAGTAATCAATTTGTTACAAATAATTGAGAGATACCACCAAAGGTTTAAGATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCCTTGAATATGCTATTGGGAGATTGCTCAATTCTTTCATAGTGACTAATCATGCGGATTTCCGTCTTTTGAAACAATGTGCGAAGGAAGCAAACTATGGCCACCTTCAAATTATTATTTATGATTTTTCAATCCCTAGGTTGAAGATACCACAACATATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACAATGCGAAAATCACACTGTGATTAATGTCTTAGTAGATCAGGGAAATGTTGAGAGACAAGTGCTAGTCAAGGATTATGAAGTTGGGAAAGTGGTTGCCTTTGAGCGAAGGATCCAAAATTTGAAGGAGGTCTATGCAGCAAATGGATGTAGAATGTTTTCTCGAGGTCCAGTGCAGACTGTTCTTCATCCAAATAAGAGGCAAAGAACTGGTCGACTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCACGCTGAAGCATCTGATGAACAAAGGTTTGCCAATGACTGTAAAAAAAATAAAAGAGTGGCAGAAGTCAAGCTTGAGGAACTCGACAAAAATATGAGTTCTATAAAGAGACAATGTGTAAATGCAGGTAAAAGTTTTACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATTTGCACACTGCTGAAAATAGTGCGACACCTTTGTCCTCTGTTGATGAGCTCATTGAAGAAATTTCAGAGATCCAGAAAAAAATAGCAGAAGAACAAGTCTTGTTGGAGGGCCTTCAGAAAAAGGGGCTTGAAGCAGCAGGAAATGCAGATGATCTTAAAGTAAAATTTGACAAACTGTGTGAATCAGCGAATGGTGAAATTGCTGCCCTGGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAAAAAGGCAAAGGATCATTACGAGGGTGTCATGAAAGACAAGGTCCTACTTGATATTGAAGAGGCAGAGGAACACCATCAGGAGCTTACAAAGAAGCGCCAGGAAAGCGTTGAAAAGGCTTCCATAATTTGCTCTCAGAATGAACTTGATTCATTGGGAGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTTGTGCGTGAAAGACAAAGGTACTCTGAATCAATCGATGATCTTAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTATGAGAAGGCAGCAAGTTTACAAAACCCTTCGACAGAAATTAGATGCTTGCCAGAGAGCCTTGGAGTTACGAAAGAGAAAGTTTCAGAGAAATGCAACATATCTGAAGCACCAGCTTTCGTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAATTATGAACAGAAAACCTTAATGATTGAGGTACAAATGCCCCAAGATGCATCAAACAAAGCTGTTCAAGATACTAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACATTGTGCTTTGCATTGGCCCTTCATGAAATGACAGAGGCCCCTTTTAGAGCGATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTAGTTGATTTTGCCGAGGCACATGGATCACAGTGGATATTCATCACTCCTCATGATACTAGCATGGTGAGGACGGGGGACAGGATAAAGAAGATGCAAATGGCTGCTCCTCGTTCTTGA	3195	0.4016	MKRGRGESMGESTSRVSPSLQHPTAGIIKRLRLENFMCHSKLETEFGSHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASSLKDFIKTGASNAVIQVEIQNEGEDAFKPEIYGHVINVERRISESASSTTLKDHQGRKVVSRKADLLEIVEHFNIDVENPCVIMTQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESIFKEITTAYQIIEELEASIRPIENELNELQVKIRNMEHVEQISIQIQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHLVEKLKESCSKKKDEIARMLEKTSQVKQMKENLNQSVYMAKKEAYELERDCKSKTNNVQKMVRQLKMLEQQVQDIREQHVKNTQAEESNVEEKLKVLKDEVHAAELKLKRLKEEEVSLMESIRRQNDEIQKIADKIHDHEKNQHAIMCRIRDLQQHQSNKITVFGGAKVINLLQIIERYHQRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNSFIVTNHADFRLLKQCAKEANYGHLQIIIYDFSIPRLKIPQHMLPDTEHPSILSVLQCENHTVINVLVDQGNVERQVLVKDYEVGKVVAFERRIQNLKEVYAANGCRMFSRGPVQTVLHPNKRQRTGRLCGSFEDEIEKLHAEASDEQRFANDCKKNKRVAEVKLEELDKNMSSIKRQCVNAGKSFTSKKLALEEEMHLHTAENSATPLSSVDELIEEISEIQKKIAEEQVLLEGLQKKGLEAAGNADDLKVKFDKLCESANGEIAALEKAESELVEIEKEMGSAKKAKDHYEGVMKDKVLLDIEEAEEHHQELTKKRQESVEKASIICSQNELDSLGGCDGNTPEQISAQLGRLNQTLVRERQRYSESIDDLRMLYKKKERKIMRRQQVYKTLRQKLDACQRALELRKRKFQRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEQKTLMIEVQMPQDASNKAVQDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSMVRTGDRIKKMQMAAPRS*	1065

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g01094	1064	Coils	Coil	873	893	-	-
	Lapu11g01094	1064	Pfam	RecF/RecN/SMC N terminal domain	28	1059	IPR003395	-
	Lapu11g01094	1064	Coils	Coil	261	288	-	-
	Lapu11g01094	1064	Coils	Coil	345	436	-	-
	Lapu11g01094	1064	Coils	Coil	771	798	-	-
	Lapu11g01094	1064	PANTHER	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	15	1063	-	-
	Lapu11g01094	1064	Gene3D	-	27	226	IPR027417	-
	Lapu11g01094	1064	Coils	Coil	807	834	-	-
	Lapu11g01094	1064	Gene3D	-	806	1061	IPR027417	-
	Lapu11g01094	1064	SUPERFAMILY	Smc hinge domain	422	602	IPR036277	GO:0005515\|GO:0005524\|GO:0005694\|GO:0051276
	Lapu11g01094	1064	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lapu11g01094	1064	Coils	Coil	722	749	-	-
	Lapu11g01094	1064	Coils	Coil	296	316	-	-
	Lapu11g01094	1064	Coils	Coil	215	242	-	-
	Lapu11g01094	1064	Coils	Coil	661	688	-	-
	Lapu11g01094	1064	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	28	1057	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g01094	Lapu-Chr11	13068262	13089374	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g01094	9	1064	Structural Maintenance of Chromosomes family	AT5G61460	59.263	0.0	1213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g01094	K22804		-	gmx:100816916	1772.29