Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01088 ATGGGCCAAATTTCTTCTCCTGCAGTTGACAGTAAGGACTCAGATCTTGAATTACCATCAAGTCTTAGTGTTCTTGCCATTGACAGTGACCTCACAGTTCTTGAATTCATCAAGAAAGCATGCAACCAGTATGGTAATCAAGTCATTGCATGCTCTGAGTCTCTAAATGCTGTGAATGTTTTACGGGAAAGAAGAGAGCTTATTGATTTGGTACTCATAGAGGTTCATATGCCAATGATGGATGGCTTTGAATTCCAACGATTTGTCAATGAAGAACACATTAATGTTCCTGTCATCATGATGTCTTGGGATGCTAGTAGGCCTTCCCAAATGAGGTCTATTAAACTTGGAGCTTGTGATTATTGGATTAAACCCTTGCATAAGGATTGGTTGAAGACTATGTGGACACATGTAATCAGGAAGTACGTGAGTGAAAACAAGACGAAAAAGAATATTGGTAGCTTGGAAGATGATAATAAAATAAGAGGGACAGGTGATAATTCTGAATTTGCTTCATCTAATGTTGATTTGAGCGATAGCAATAGAGAAGACGATGATGTTGATGAATCAAAGAATAGTGATGGACCCTCCGCAAAGAAGACCCGTGTAGTATGGTCACCAGAACTGCATCTTGCATTTCTCGAAGCTATCGATCAAATTGGAATTGAAAATGCCGTGCCAACGAAAATTCTTGAAGCCATGAATATCCCTGGTTTGGAAAGAGGACATGTTGCTAGTCATTTGCAGAAATACAGAAAAAATTTGACGCAGAGACAACAGCAGTGTGAGATGTCATCGGTTTTAGGGAAGACAGAACCAAGGATGCCATCTGGAAGAATCCTCTTGCAACCTTTGTCTGCTACTACAGAACAAGCTTTGGCTCATGATCATTTAACGACCTTTCCTAACATTGTCATTACTGAGAATTTTCCACAGTCCATGGGAACTCTAGATGATGCTTATATAGATTATGTTCTATTTGATACAGTGCTAGTTGACAATCCAACTGTGCTTCAGCAGTCATGGATGCATCGTCATCATATTCATCCAATGAACTTTCAGTCATCTTCCCTGATAATTTCTAGAAATCCAATTGGCATGAACATGAATCATGGTTTAATATCATCTCAGTCAGTCCGAGGTGGAAACATGGGTAAAGTCATTCTCAATCAATATACTACTAGAGCTTCCATTTATCACCCACAACTTCAAAATACAGGTTTACCAAGTGATGCTGTGAGATCTTTTGCTGTAAGTGATTCTAGTAGTCAAAATCTCTCCACAGATACTGATGATAAACAACCAACGAGCAGTTAA 1317 0.3903 MGQISSPAVDSKDSDLELPSSLSVLAIDSDLTVLEFIKKACNQYGNQVIACSESLNAVNVLRERRELIDLVLIEVHMPMMDGFEFQRFVNEEHINVPVIMMSWDASRPSQMRSIKLGACDYWIKPLHKDWLKTMWTHVIRKYVSENKTKKNIGSLEDDNKIRGTGDNSEFASSNVDLSDSNREDDDVDESKNSDGPSAKKTRVVWSPELHLAFLEAIDQIGIENAVPTKILEAMNIPGLERGHVASHLQKYRKNLTQRQQQCEMSSVLGKTEPRMPSGRILLQPLSATTEQALAHDHLTTFPNIVITENFPQSMGTLDDAYIDYVLFDTVLVDNPTVLQQSWMHRHHIHPMNFQSSSLIISRNPIGMNMNHGLISSQSVRGGNMGKVILNQYTTRASIYHPQLQNTGLPSDAVRSFAVSDSSSQNLSTDTDDKQPTSS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01088 438 FunFam Two-component response regulator 196 259 - -
Lapu11g01088 438 Pfam Response regulator receiver domain 24 134 IPR001789 GO:0000160
Lapu11g01088 438 SUPERFAMILY CheY-like 20 154 IPR011006 -
Lapu11g01088 438 Gene3D - 22 156 - -
Lapu11g01088 438 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Lapu11g01088 438 Gene3D - 197 258 - -
Lapu11g01088 438 MobiDBLite consensus disorder prediction 153 201 - -
Lapu11g01088 438 MobiDBLite consensus disorder prediction 417 438 - -
Lapu11g01088 438 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 294 IPR045279 GO:0009736
Lapu11g01088 438 CDD REC_typeB_ARR-like 24 139 - -
Lapu11g01088 438 SUPERFAMILY Homeodomain-like 198 255 IPR009057 -
Lapu11g01088 438 ProSiteProfiles Response regulatory domain profile. 23 139 IPR001789 GO:0000160
Lapu11g01088 438 SMART REC_2 22 135 IPR001789 GO:0000160
Lapu11g01088 438 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01088 Lapu-Chr11 13032600 13034411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01088 57 252 Response Regulator Gene Family AT3G16857 40.639 7.23e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu11g01088 Response_reg 2.4e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01088 - - pvu:PHAVU_002G322000g 378.637