Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01084 ATGGAAGCAGCTGTGGTGGACGTGGGCTCTAAGCTTCTCAAAGCTGGTTTTGCAATTCCTGACCAGACTCCGGCCATGATAATTCCCACCAAAATGAAACAAATGCTTGATGAAGGATCGGTTACTGATAATTCACTGGTTGAGAATGTCACGGTTGATCCAGTTATGCGGGGATTTATTAGAGATTGGGATGCCATCGAGGATTTGTTGCAGCATGTTTTATATACTGGCCTCGGATGGGAAATTGGCAATGAAGGTCAAATACTCTTTACGGATCCACTTTGTACTCCAAAGTGTATACATCATTGTTTTCCAATTTTCCAGGCCAACAAAGAACAGTTGGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCAGAGCAAGCAGTGTTATCACTGTATGCTGTGGGGCGAATCTCAGGCTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCGGTAATTGAGGGTGCTGTTCACCATATTGCCTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAGTCCAATCCACAAGTAAATATCAGCATGTCTGATGTGGAGAAAATAAAAGAGCAGTACTCATGCTGTGCTGTAGATGAGTTAGCTTATCAAAAGACCCAATATATTTGTCCTGTGGAGGAGCACACCCTTCCTGATGGACAGGTGATAAAAATTGGGAGAGAAAGATATACGGTTGGGGAAGCTTTGTTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTTCGTGCTATTTCAACTGTGTCATCTGATAATCAACGGCAGCTGCTTGAAAATACTGTGGTTTGTGGTGGCACTTCATCTATGACAGGTTTTGAAGAGAGATTTCAGAAAGAATCTAGCTTAAGTTCATCCGCTGTTCAACCTACCCTGGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCAATACTTGCCAAAGTGGTTTTCCCTCAAAATCAGCATATAACCAAGGCAGACTATGATGAAACCGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1116 0.4229 MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTKMKQMLDEGSVTDNSLVENVTVDPVMRGFIRDWDAIEDLLQHVLYTGLGWEIGNEGQILFTDPLCTPKCIHHCFPIFQANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKSNPQVNISMSDVEKIKEQYSCCAVDELAYQKTQYICPVEEHTLPDGQVIKIGRERYTVGEALFQPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01084 371 Gene3D - 5 365 - -
Lapu11g01084 371 PANTHER ACTIN 4 364 IPR004000 -
Lapu11g01084 371 SMART actin_3 1 371 IPR004000 -
Lapu11g01084 371 Pfam Actin 2 371 IPR004000 -
Lapu11g01084 371 SUPERFAMILY Actin-like ATPase domain 2 148 IPR043129 -
Lapu11g01084 371 Gene3D - 133 334 - -
Lapu11g01084 371 SUPERFAMILY Actin-like ATPase domain 141 371 IPR043129 -
Lapu11g01084 371 CDD NBD_sugar-kinase_HSP70_actin 4 178 - -
Lapu11g01084 371 FunFam Actin-related protein 7 175 262 - -
Lapu11g01084 371 PRINTS Actin signature 227 243 IPR004000 -
Lapu11g01084 371 PRINTS Actin signature 135 154 IPR004000 -
Lapu11g01084 371 PRINTS Actin signature 45 67 IPR004000 -
Lapu11g01084 371 Gene3D Actin; Chain A, domain 4 175 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01084 Lapu-Chr11 13008197 13014458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01084 5 371 Cytoskeleton Gene Families AT3G18780 35.065 3.89e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01084 K16615 - gmx:100813266 691.034