LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g01036	ATGGTTCCATCTTCTGTCATTGTTAATTCCCGTTTTCATGAATCGGTTACCTGCTATGCATTTCGCTCCTATCTCTCTGAGTTTATCTCCACTTTCTTCTACGTTTTTCTTGTTGTTGGCTCTGGAATGTCCTCACAAATGACAGGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTTTGGTTGTGGTAGCCATTGCAAGTACTTTTGCTTTGTCTTGTGTTCTGTATATTGCATGGGACATATCAGGTGGACACGTCAATCCGGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCTCTCTTTTATTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGGGTCATTGTTGTTGGGATGCACGTTCCAACCTACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGTTAGAGGGTATTCTGACATTTCTTTTGGTGTTCACAGTGTATGCAGCCAGGGACCCTAGGCGCAGTCCAATGGGTTCCACAGGCATACTTGTAGTTGGCTTTGTGGCTGGGGCAGGTGCGTTGGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCGGCAACCATTGCAGGCTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCCACCATAGGTGGTCTTCTTTATGACAATGTGCTGTTCCGTTCTCTGCCTCCTACAGGGCTTTCAGAAGGAATGGGTGTGTGA	771	0.4786	MVPSSVIVNSRFHESVTCYAFRSYLSEFISTFFYVFLVVGSGMSSQMTGKLMPDASLNPTSLVVVAIASTFALSCVLYIAWDISGGHVNPAVTFAMAVGGHVSVPTALFYWVAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGILTFLLVFTVYAARDPRRSPMGSTGILVVGFVAGAGALAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIGGLLYDNVLFRSLPPTGLSEGMGV*	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g01036	256	PANTHER	AQUAPORIN-8	12	242	IPR034294	-
	Lapu11g01036	256	FunFam	Probable aquaporin TIP5-1	6	248	-	-
	Lapu11g01036	256	Pfam	Major intrinsic protein	19	237	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lapu11g01036	256	PRINTS	Major intrinsic protein family signature	22	41	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lapu11g01036	256	PRINTS	Major intrinsic protein family signature	106	125	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lapu11g01036	256	PRINTS	Major intrinsic protein family signature	220	240	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lapu11g01036	256	PRINTS	Major intrinsic protein family signature	69	93	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lapu11g01036	256	PRINTS	Major intrinsic protein family signature	183	205	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lapu11g01036	256	PRINTS	Major intrinsic protein family signature	151	169	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lapu11g01036	256	ProSitePatterns	MIP family signature.	87	95	IPR022357	-
	Lapu11g01036	256	Gene3D	Glycerol uptake facilitator protein.	5	246	IPR023271	-
	Lapu11g01036	256	SUPERFAMILY	Aquaporin-like	13	245	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g01036	Lapu-Chr11	12653312	12655221	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g01036	1	253	Major Intrinsic Protein MIP	AT3G47440	59.684	2.13e-99	289

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g01036	K09873		-	gmx:100801448	408.683

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu11g01036	11	12653312	12655221	Lapu11g01036	11	12653312	12655221	ECH