Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01026 ATGGCTGTTGAGACTTCCGATAAACCAAATTTACCTCGTGATTTTGACGATGATGATGATACACCATTAATTTACAAAAGGTATACTAAGAAAAATCAATCACATTCAGAAGCAAGAAAGTCAAGTTCTCACAGTCATGATGGACAGTCATATAGACAGATTCCTAATGCACCTTCTTCGAATGGCCAAACTCCTAGCATGCAGAAAGGTAGTACTACTGCCCCATCTCTTAAGCCAGCAGCCATGAAGCCTTCTGTAGGTATCTCAAAAGCTTCAAATTCTGTAGGCAACACCTCCTCTGTGAAGTTGCCTGTAGCAAATTCAAAATCACCTTCATTGGCAGATAAGCAGAAAATGTCCATTGATGTCAAGGTGGAACCAAAATCTATTGAACACAGTGGTAAAGATAAGAAGCCTATTTCTAAAATTCAGAAGGAGCGGCAAAATGGTTCTGGCATGAGTAATAAGCAGGATAGGCCATCTTCATTGCCAGCTAAGAGACCACTAGATAATAGTAATTCCTTGCACCCTTCTGTTAAGAAGCCTAAAGTGTTTACAAAGGTTGCTAAAGTTAACAAGTCTAGTTCAAAACCTTTCAAGAAACAGACCAAGAAGACAGTTAAAAAATCAGGCAGTGGTTCAGAATATTCCAAATCTAGCAAACTTCTTCCTAGCTCCGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCCCCTCCATACCAGCGGCATGGGGTAAAGATGCTCTATAAGGGGAGACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGAGAGATACTGAGTACATGCAGAAAGATAAGTTCAAGGATAATTTCTGGAATGACTGGCGTAAGGTGCTTGGAAGAAATCATGTAATCCAGAACTTGAAAGACTGTGATTTCACTCCAATATATGATTGGTACCAAAGTGAGAAGGAAAAGAAGAAGCAAATGACAACCGATGTTGGGAACTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGGGGAGAGCACCCGAAGATGGGAAAATTGAAAAGACGCATTCATCCAGGTGACATAACAATTAATATTGGAATGGATGCCCCAATTCCTGAATGTCCTATTCCTGGTGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACCTGGTTAGCCTATTGGAGTGACCCTATAAATCCAAAGTTATTCAAATATGTGTTTCTGGCTGCTAGCAGTTCCTTGAAGGGGCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTGAAGGATTATATAGCAAACATTAGGTCTGCGTACACAAAAGATTTTACCAATAAAGATATTACTAAGCTGCAAATTGCTGTTGCTACTTATCTTATAGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGACGATGAAGCTGATACTGTTGGTTGCTGTACATTAAAAGTAGAGAATGTGACAAGAGAACCCCCCAACAAACTCAAGTTTAACTTCCTCGGTAAAGATTCTATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTGTATAATGCAATCTTGAAGTTACAGAAAGATAAACGTCCTGGTGATGATCTTTTTGATAAGCTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGTCTAACCGCAAAAGTCTTCCGTACATTCAATGCATCAATCACATTGGATAATATGTTAAATAAAGAAACCAAAGACGGAGATGTTGGGGAGAAAATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCTATCATTTGCAATCATCAACGTAGTGTTTCAAAATCTCATGATGCACAGATGTCGAAGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAACGGACTTAGACAGGGCAAGGAAAGGAAAGCCCCCTTCAAAGAGTTCAGATGGAAAGACAAAAAAGAACTTGACTCCTGAAGTGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATCGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATTTAAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATTGAAAAGTTTAGCATGTTCTCATTCTCATACATGGAAACGTGGTTCATTCTCACTGTTCTATGTTTTTGCCTTTGGCTGATTCTGAAATACACGTGTAACGTTCTCTTTCCTTCCCTCCCTCCGGGACCTCCCAAATGGAACTTTACATTGGTACGAGGATACCTCACTGACCCCAAAACCATTCTTCAAAAACTGCTTGCAAAATATGGCCCAATCTTCACTGTTCACGTTGGTTATTCTCACACTGATATTTTCATCGCAAGTCGTTTCCTTGCACACCAAGCTTTGATCCAACATGGCACCATCTTCGCTGATCGCCCCAAGGCTAACCCCACCAACAAGGTTATAAGTAGCAACCAACATGACATTCTTTTCAGCTTCTATGGCCCCAAATGGCGCCTCCTTAGGCGCAACCTCACGTCCAGCATCCTTCACCCTTTACGTGTTAAATCCTATGCACGTGCACGCAAATGGGTCCTAGAGATGCTCCTACAAGGCCTCATATCTGATTCTGATGCCAGCAGCCCCGTTAGGGTCATTGACCACTTTCGATATGGCATGTTCTTTTTGATGGTTTTGATGTGCTTTGGTGACAAACTCGATGAGAAGCAAATAAGGGAAATTGAGGACAGTCAACGTGACATGCTTGTGAACTATGCTAGGTACAGTGTCTTGAATTTTTGGCCACCAGTTACTAGGATTTTGTTCTGGAAGAGATGGAAGGAGTTCTTGCAGAAGCGGAGAGACCAAGATGCTGTGTTGATTCCTCACATCAATGCTCGAAGGAAAGCTAAGGAAGAGAGAATAAGCAATGGTTCAAGTCAGTCCGGTGATTTTGTTTTGTCATATGTAGACAGTTTGTTGGATTTGCAAATGTTGGAGGATGAGGAGGGGATCAAGCTTGATGATGGTAAAATTTGCACCTTATGTTCGGAGTTTCTGAATGCTGGATCAGATACAACTTCAACTGCATTGGAGTGGATCATGGCAAATTTGGTGAAATACCCCGAAATCCAAGAAAGTGTCGTGGAGGAAATTAGAGGGATGATGGTTGGTAGAGAGGATAGGGAAGTGAAGGAGGAGGATTTGCGTAAATTGCCTTATCTCAAGGCTGTGATTTTGGAGGGGTTGAGGCGTCACCCTCCATTACACTTTGTGGCTCCTCATAGGGTAACAAAGGATGTTGTTTTAAATGGTTATTTGGTGCCTACCTATGCCTCAGTGAATTTCTTGGTGGCCGAGATAGGGAGGGACCCAACAGCTTGGGATGACCCCATGGCCTTTAAGCCAGAGAGGTTCATGAACATTGGGGACCAAAATGGAGGCACAACTTTTGACATGATGGGAAGCAAAGAGATAAAGATGATGCCGTTTGGGGCAGGGAGGAGAATGTGTCCTGGCTATGCTTTGGCAATACTGCACTTGGAGTACTTCGTGGCCAATTTCGTTTGGAATTTAGAGTGGAAGGCTGTGGATGGAGACCATGTTGATCTGTCAGAAGAGCTGCAATTCACAACGGTAATGAAGAATCCTTTGAAGGTTCGCATATTACCTAGGCAATAG 3735 0.419 MAVETSDKPNLPRDFDDDDDTPLIYKRYTKKNQSHSEARKSSSHSHDGQSYRQIPNAPSSNGQTPSMQKGSTTAPSLKPAAMKPSVGISKASNSVGNTSSVKLPVANSKSPSLADKQKMSIDVKVEPKSIEHSGKDKKPISKIQKERQNGSGMSNKQDRPSSLPAKRPLDNSNSLHPSVKKPKVFTKVAKVNKSSSKPFKKQTKKTVKKSGSGSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYQRHGVKMLYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKDNFWNDWRKVLGRNHVIQNLKDCDFTPIYDWYQSEKEKKKQMTTDVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPGDITINIGMDAPIPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIANIRSAYTKDFTNKDITKLQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKLQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDNMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDAQMSKLTEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKTKKNLTPEVLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKFSMFSFSYMETWFILTVLCFCLWLILKYTCNVLFPSLPPGPPKWNFTLVRGYLTDPKTILQKLLAKYGPIFTVHVGYSHTDIFIASRFLAHQALIQHGTIFADRPKANPTNKVISSNQHDILFSFYGPKWRLLRRNLTSSILHPLRVKSYARARKWVLEMLLQGLISDSDASSPVRVIDHFRYGMFFLMVLMCFGDKLDEKQIREIEDSQRDMLVNYARYSVLNFWPPVTRILFWKRWKEFLQKRRDQDAVLIPHINARRKAKEERISNGSSQSGDFVLSYVDSLLDLQMLEDEEGIKLDDGKICTLCSEFLNAGSDTTSTALEWIMANLVKYPEIQESVVEEIRGMMVGREDREVKEEDLRKLPYLKAVILEGLRRHPPLHFVAPHRVTKDVVLNGYLVPTYASVNFLVAEIGRDPTAWDDPMAFKPERFMNIGDQNGGTTFDMMGSKEIKMMPFGAGRRMCPGYALAILHLEYFVANFVWNLEWKAVDGDHVDLSEELQFTTVMKNPLKVRILPRQ* 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01026 1244 PRINTS Eukaryotic DNA topoisomerase I signature 701 712 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 PRINTS Eukaryotic DNA topoisomerase I signature 506 522 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 PRINTS Eukaryotic DNA topoisomerase I signature 345 354 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 PRINTS Eukaryotic DNA topoisomerase I signature 461 480 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 PRINTS Eukaryotic DNA topoisomerase I signature 484 498 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 PRINTS Eukaryotic DNA topoisomerase I signature 564 578 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 232 333 IPR008336 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 333 416 IPR008336 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 Gene3D - 568 739 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lapu11g01026 1244 FunFam DNA topoisomerase I 247 331 - -
Lapu11g01026 1244 Coils Coil 617 651 - -
Lapu11g01026 1244 CDD Topoisomer_IB_N 232 417 - -
Lapu11g01026 1244 Pfam C-terminal topoisomerase domain 680 727 IPR025834 -
Lapu11g01026 1244 Pfam Cytochrome P450 764 1236 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lapu11g01026 1244 Pfam Eukaryotic DNA topoisomerase I, catalytic core 419 644 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 227 417 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lapu11g01026 1244 CDD CYP77_89 792 1237 - -
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 9 46 - -
Lapu11g01026 1244 Coils Coil 675 695 - -
Lapu11g01026 1244 Gene3D Cytochrome P450 761 1244 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lapu11g01026 1244 CDD Topo_IB_C 425 618 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 1 229 - -
Lapu11g01026 1244 SMART topeu 345 721 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lapu11g01026 1244 Gene3D - 248 326 IPR013034 GO:0003917|GO:0006265
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 645 667 - -
Lapu11g01026 1244 SUPERFAMILY Cytochrome P450 760 1243 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 119 144 - -
Lapu11g01026 1244 FunFam DNA topoisomerase I 568 740 - -
Lapu11g01026 1244 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 694 712 IPR018521 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 145 179 - -
Lapu11g01026 1244 FunFam Cytochrome P450 family protein 759 1244 - -
Lapu11g01026 1244 PANTHER DNA TOPOISOMERASE I 334 731 - -
Lapu11g01026 1244 FunFam DNA topoisomerase I 419 567 - -
Lapu11g01026 1244 Gene3D Topoisomerase I; Chain A, domain 3 419 567 IPR014711 GO:0003677|GO:0003917|GO:0006265
Lapu11g01026 1244 SUPERFAMILY DNA breaking-rejoining enzymes 419 739 IPR011010 GO:0003677
Lapu11g01026 1244 Gene3D DNA Topoisomerase I, domain 2 327 417 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 87 115 - -
Lapu11g01026 1244 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1182 1191 IPR017972 GO:0005506|GO:0016705
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 47 75 - -
Lapu11g01026 1244 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01026 Lapu-Chr11 12582971 12594997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01026 735 1244 Cytochrome P450 AT1G64940 51.916 2.02e-175 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01026 K03163 - gmx:100799837 1169.07