Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01016 ATGTTTGATTTGGGTATTGAAGGAGAGTGTGGTGTTACTGATAGGAGTGTGAGGAGTGGAATTAACAAAAACATGAACAACAGTGGTGGAGGAACTTTTATGGGTTTGAGCAATGATTGTTATGGGAGATCGCCATTCACAGTGTCCCAGTGGGAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGCTTGCGGGTCTTCCTGTGCCTCATAATCTGGTGCTCCCCATTCAGAAGAGCTTCGACTCTATACCACATGCATTCTTTCACCACCCCACATTGAGTTATTGTTCCTTTTATGGGAAGAAGGTGGACCCAGAGCCAGGGCGTTGTAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCAAAATCTATAAATCAATCTTCTTCAACTGTCTCATCACTAGATGTCACTGAAGGAAGTGGCTGCAGTAGAACTGTAAACTTCCAAAGCCTTCCTGCAGATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCATACCAATGATCATCTACATAATATTCCTTATGCCATCCCAAGTAAAGAATACAGGTATCTCGAAGGACTTAAATCTGAGGGTGGTGAACATATCTTCTTTTCCGAAGCTTCAGGAAGCAACAAGGTTCTCCGAATGGAGTCACAGCTGGAAGACACGTGGCCTTTGATGTCTACCAGAGTTTCCTCTTTTTCTACATCAAAATCAAGTAGTGATTCCCTGTTGCACAGTGATTATCCCCAGCATTCGTTTCTATCTGGCGAATATGAGCACTTGAAGGTGGAGGGTCATCCTTCTCGACCTTTTCTCAATGAATGTCCAAAAAGCAGAGATTCATGGTCTGGTCTGGAAGATGAGAGATCTAACCAAACAGCCTTCTCCACAACTCAGCTCTCAATATCCATTCCTATGTCTTCTGATATCTCTGCAACGAGCTCTCAGTCCCCACATGGTGAGAATGAGATTCAATTCAGGTAA 1065 0.4507 MFDLGIEGECGVTDRSVRSGINKNMNNSGGGTFMGLSNDCYGRSPFTVSQWEELEHQALIFKYMLAGLPVPHNLVLPIQKSFDSIPHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESKSINQSSSTVSSLDVTEGSGCSRTVNFQSLPADAFGNLQGTDSGTDHTNDHLHNIPYAIPSKEYRYLEGLKSEGGEHIFFSEASGSNKVLRMESQLEDTWPLMSTRVSSFSTSKSSSDSLLHSDYPQHSFLSGEYEHLKVEGHPSRPFLNECPKSRDSWSGLEDERSNQTAFSTTQLSISIPMSSDISATSSQSPHGENEIQFR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01016 354 SMART QLQ_2 44 80 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu11g01016 354 MobiDBLite consensus disorder prediction 293 354 - -
Lapu11g01016 354 ProSiteProfiles WRC domain profile. 106 150 IPR014977 -
Lapu11g01016 354 MobiDBLite consensus disorder prediction 134 165 - -
Lapu11g01016 354 ProSiteProfiles QLQ domain profile. 45 80 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu11g01016 354 Pfam WRC 107 149 IPR014977 -
Lapu11g01016 354 PANTHER GROWTH-REGULATING FACTOR 5 28 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lapu11g01016 354 MobiDBLite consensus disorder prediction 314 354 - -
Lapu11g01016 354 MobiDBLite consensus disorder prediction 149 165 - -
Lapu11g01016 354 Pfam QLQ 45 79 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01016 Lapu-Chr11 12507616 12511129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01016 35 149 GRF Transcription Factor Family AT3G13960 60.504 3.37e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lapu11g01016 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01016 - - gmx:100787567 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g01016 11 12507616 12511129 Lapu11g01016 11 12507616 12511129 ECH