Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01013 ATGTCAAGAACCTCGCAGGTTGTTACATGCAAAGCTGCGATATGCTGGGGATTAGGACAGCCTGTTACGGTGGAGGAGATACAAGTTGACCCACCAAAAGCAACTGAAGTTCGAGTTAAGATGCTTTGTGCCAGTATATGCCACACAGACATATCAAGCATTCATGGATTCCCACATAACAAATTTCCTCTAGCCCTTGGACACGAAGGAGTTGGAGTTGTAGAGAGTGTTGGTGATGAAGTGACAACCCTTAAAGAGGGTGATGTAGTAATCCCAACATACATAGGCGAGTGTGAAACATGTGAGAATTGTGTTTCTGGGAAAACCAATTTATGTATGACACATCCTGTGAGACCGACTGGTTTACTACCAGATAACACTTCAAGGATGTCGATCAGAGGACAGAGACTATACCATTCTTTAAGTTGTGCTACATGGTCAGAATACATGGTTAGTGATGTCAATTACACTCTCAAAATTGATCCAACCATTGATCCAGCTCATGCCAGTTTCATCTCATGTGGGTTTTCAACTGGCTATGGAGCTGTTTGGAAGGAGGCCAAGGTTGAAAGTGGTTCCACTGTAGCTGTTTTGGGTCTTGGAGCAGTTGGATTAGGGGCTCTAAGTGCAGCCAAAATTATGGGAGCAACTAAGATAATTGGAATTGACAAAAATGAGAAGAAGAGAGAAAAAGGTGAGGCTTTTGGAATGACCCATTTTATAAATCCTAGTGATTCTGCCAAATCTGTATCAGAATTGGTTAAGGAAGCAACTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAATTGCCCCTTTGCTTAGTGAATCATTGGAAGCCACAAAAGTGGGAACGGGTAAAACAGTAGCAGTTGGAATAGCAGCAGAACCTATTGTTCCTTTGGTTTTTATGTCCATTCTTTTCGGTAGAACTTTGAAAGGTTCTGTTTTTGGGGGTCTGAAAGTCAGATCTGATCTGACCATAGTAGCTAACAAATGCCAAAAAAAGGAATTCCCTCTTCAAGAACTATTCACTCATGAGTTTCCATTAGAAGATATTAACAAAGCATTTGAGGTATTGAAAGAGCCCACTTGTGTGAAAGTTGTCATCAAGATGTCACATTGA 1131 0.4156 MSRTSQVVTCKAAICWGLGQPVTVEEIQVDPPKATEVRVKMLCASICHTDISSIHGFPHNKFPLALGHEGVGVVESVGDEVTTLKEGDVVIPTYIGECETCENCVSGKTNLCMTHPVRPTGLLPDNTSRMSIRGQRLYHSLSCATWSEYMVSDVNYTLKIDPTIDPAHASFISCGFSTGYGAVWKEAKVESGSTVAVLGLGAVGLGALSAAKIMGATKIIGIDKNEKKREKGEAFGMTHFINPSDSAKSVSELVKEATGGMGVDYSFECTGIAPLLSESLEATKVGTGKTVAVGIAAEPIVPLVFMSILFGRTLKGSVFGGLKVRSDLTIVANKCQKKEFPLQELFTHEFPLEDINKAFEVLKEPTCVKVVIKMSH* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01013 376 CDD liver_alcohol_DH_like 8 373 - -
Lapu11g01013 376 Gene3D - 14 369 - -
Lapu11g01013 376 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Lapu11g01013 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 336 IPR036291 -
Lapu11g01013 376 Gene3D - 179 317 - -
Lapu11g01013 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Lapu11g01013 376 Pfam Alcohol dehydrogenase GroES-like domain 35 153 IPR013154 -
Lapu11g01013 376 PANTHER ALCOHOL DEHYDROGENASE 6 366 - -
Lapu11g01013 376 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Lapu11g01013 376 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Lapu11g01013 376 SUPERFAMILY GroES-like 5 190 IPR011032 -
Lapu11g01013 376 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Lapu11g01013 376 SUPERFAMILY GroES-like 325 372 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01013 Lapu-Chr11 12476066 12478515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01013 35 323 Monolignol Biosynthesis Gene Families AT2G21730 29.392 1.91e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01013 K00121 - gmx:100798341 623.624