Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01000 ATGGGTAGAGCACCATCCAGTGATGAAAGTGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAATATATTGGTGGATTACGTTCAGAGACATGGGCATGGGAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGGAAAAGTTGTAGGCTAAGGTGGACAAACTATTTGAGGCCTGATATCAAAAGAGGAAAGTTCTCTCAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAACAAGTGGTCAGCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTGACTCATCGACCAAGATCAGATCACCTTAATCTTCTATCCAGTCTTCAACAGTTGCTGGCTGCTACAAACATTGTCAGTAATTTCACAAACACTTGGGACATCAATGCTCTAAGGCTGCAATCAGATGCTACACAACTAGCCAAACTCCAATTGCTGCAGAACATACTTCAAGTCCTTGTGGCCAGTCCTGCCTCAAACTTGGACCTGCTCAATATTCCTTTTGGACCATCACCTTCACTGCCAGATGGTTTCCTAAATGAAGTTTTGGGATTGGATCAGTCCAAGCTCCAAAACCTTTACAATAGTTCAACTGCTTTTCTTTCTCAAAATCAGCCAAACTTCCAAAGCTTTCCTCAGCAGCAAGCTCTACCCAGCGGATATGACCACATGAATGGAGGAAGCAACATGAGTTGCATGAAATCTGAAAAGGTTGATGAACAACTTGATGCCCCATATTCTTCTTCAACACCACTAGATTCTCTTCCAAATCTAGTTTCAGCCTCTCCTGAATGTTCCACTGGCAAGCAAATGGAAAATAAGGTAAACCCAAATGAGTTTTCTGACCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGCGATGCTTATTGGAAAGATCTCATAGAGTAA 1026 0.425 MGRAPSSDESGLKKGPWTPEEDNILVDYVQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSSLQQLLAATNIVSNFTNTWDINALRLQSDATQLAKLQLLQNILQVLVASPASNLDLLNIPFGPSPSLPDGFLNEVLGLDQSKLQNLYNSSTAFLSQNQPNFQSFPQQQALPSGYDHMNGGSNMSCMKSEKVDEQLDAPYSSSTPLDSLPNLVSASPECSTGKQMENKVNPNEFSDPSSTSTTFEMWGDFMYEEVSDAYWKDLIE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01000 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu11g01000 341 CDD SANT 69 112 IPR001005 -
Lapu11g01000 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 286 - -
Lapu11g01000 341 SMART sant 66 114 IPR001005 -
Lapu11g01000 341 SMART sant 13 63 IPR001005 -
Lapu11g01000 341 CDD SANT 16 61 IPR001005 -
Lapu11g01000 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu11g01000 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu11g01000 341 Gene3D - 69 116 - -
Lapu11g01000 341 FunFam MYB-related transcription factor 13 66 - -
Lapu11g01000 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu11g01000 341 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu11g01000 341 FunFam Transcription factor MYB39 69 130 - -
Lapu11g01000 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu11g01000 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu11g01000 341 Gene3D - 13 66 - -
Lapu11g01000 341 MobiDBLite consensus disorder prediction 269 316 - -
Lapu11g01000 341 MobiDBLite consensus disorder prediction 272 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01000 Lapu-Chr11 12404012 12405231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01000 1 341 MYB Transcription Factor Family AT5G16770 50.140 1.43e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g01000 Myb_DNA-binding 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01000 K09422 - gmx:547488 546.199