Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00989 ATGGGAGATGAAGACGATGACGAGGTTCTCGGTTGCGCCACCACCGTTTCCGGCCAATCCGCCTCCACCAACAGCTTGCCACCTCCCGCCGACAACACACTCCTCAAATTGAACCATCTCGACCTACACGCTGATGATGCTGGATCACAAGCCTCTCTTGCCAGTGGCAAGAAGAAAAAGAGAGGCCAACGCGCAGTTGGACCTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTGGAAAACAGGGGAAGAACAACTTACAATGAGGTGGCGGATGAGCTTGTTGCTGAATTTTCTGATCCAAGCAATAGTGAATTGACCCCTGACCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGACATTATTTCTAAGGATAAAAAGGAAATTCAATGGAAGGGTCTTCCTCGTTCGAGTGTGAATGATATTGAAGAAATAAAGACAGAGCGTCTTGCGCTCAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTCGAGGAGCAATTCGTAGGCCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCTAGTGGAGGTGTATCTTTGCCTTTTATTCTCGTACAGACACGTCCTCATGCAACTGTAGAAGTGGAAATATCCGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGGATGATAATACGACACACAATTTTACGGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGCCAGCCACAAGCTCCTCTTACGAATCTAAAAGTGTCAAATAGGCCTCCAACATCACCTCCTCTCCCTGGCATATTAAAGGCAAGGGTTAAGCAAGAGCACTAA 969 0.4541 MGDEDDDEVLGCATTVSGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLASGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPSNSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRSSVNDIEEIKTERLALRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQDDNTTHNFTDGGEGSSMSGLCQPQAPLTNLKVSNRPPTSPPLPGILKARVKQEH* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00989 322 Gene3D - 66 158 IPR036388 -
Lapu11g00989 322 CDD DP_DD 158 261 IPR014889 -
Lapu11g00989 322 Coils Coil 169 203 - -
Lapu11g00989 322 MobiDBLite consensus disorder prediction 1 32 - -
Lapu11g00989 322 Pfam Transcription factor DP 161 274 IPR014889 -
Lapu11g00989 322 SUPERFAMILY "Winged helix" DNA-binding domain 73 154 IPR036390 -
Lapu11g00989 322 SMART E2F_TDP_2 70 153 IPR003316 GO:0005667|GO:0006355
Lapu11g00989 322 MobiDBLite consensus disorder prediction 13 31 - -
Lapu11g00989 322 PIRSF Txn_factor_DP 9 322 IPR015648 GO:0005667|GO:0051726
Lapu11g00989 322 Gene3D Transcription factor DP 159 279 IPR038168 -
Lapu11g00989 322 SMART DP_2 160 320 IPR014889 -
Lapu11g00989 322 SUPERFAMILY E2F-DP heterodimerization region 160 274 IPR037241 -
Lapu11g00989 322 PANTHER TRANSCRIPTION FACTOR DP 22 275 IPR015648 GO:0005667|GO:0051726
Lapu11g00989 322 MobiDBLite consensus disorder prediction 49 74 - -
Lapu11g00989 322 Pfam E2F/DP family winged-helix DNA-binding domain 73 153 IPR003316 GO:0005667|GO:0006355
Lapu11g00989 322 FunFam Transcription factor-like protein DPB 65 158 - -
Lapu11g00989 322 FunFam Transcription factor-like protein DPB 159 283 - -
Lapu11g00989 322 MobiDBLite consensus disorder prediction 271 322 - -
Lapu11g00989 322 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00989 Lapu-Chr11 12335030 12343833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00989 71 271 E2F-DP Transcription Factor Family AT5G02470 53.960 3.30e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lapu11g00989 DP 5.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00989 K04683 - gmx:100798342 574.704