Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00951 ATGGAGTTGGTGGGGAAGACAGTTAGGAAAGAGGTGAAGGGGGTTGGGTTTATCTCGGGAACAGTGAATTCCTACGACCCTTCCTCTGGTTTTTTTGAGATCGTTTACGAAAATGGTGATTCTGAGGAGTTGGAGTCCTCTGACGTGGCTACTCTCTTGCAATTCCAACCGGAGAGCGCCAAGGCCAAGCCTCGAGTTGGTCGGAAACCTAAGAAGCGCCGCCGTGTTGAACGGAATAGTGATGCTGGAGCAGGTTCAGGTAATGATAGAGAGAATTTGGTGAGGGAGGATAGTGATATTAGAGGGGTTTTGGATGGGGATGTTACCTCTGCTAGTGCTGGAGATTTGGGTTTGGATAGTGGTGGGTTAGAGAGAAATTTGGATGATATAACTGGGAATGGAGGGAATCTTGAGGGTAGTGTTAATGGTACTGTGCAGGAAAATGGGGTTAGAGAAACTCTGAGAGAGGAAATTGGTTTAGAAGATAGTTTGAACAAGAGTTTTTCCGGAAATGTTACTTGTGTTAAAGATGAACTTGATTTGAATGCTAGACTTAATCTGGATGAGGATTTAAATTTAAATGATGGGTGTAGTTGGCCTATTGCCACTGAGGATGGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTGAGTAATGAGGATGATGTTGGCCTGAACCCAGGTCACTTGGGTTCGGGGGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAATGTGGAGGTAGTATGTGAAGAAGGTAAGGAAACTCGGTGTGATGATGACAGAAATGGACATTCTGAGGTGGGTAATGTTTTGTTTGGTAAGATGGGGCTGCTCCAAAAGGAAGACATAAATGTTAATAATAGTTCTCTGGAAAACGAGGGTATTAATGGCAATTTGAATCATGCCTTCGATGTGGTCAAATTGGAGGGAATTCATGTTTCTGCTGATCATCCATCTAAAGATGGTTATTTGTGTTTGGTTGAGGAAAATGGAGGAGATGTTCACAAAGAAGACACAGGGACTATTAATTTTCATCAGATTTCAAATGCAATTTCTATTAGGAATTCAGATTTTGGGGAGGCTCAACGAGTTCATTGTCCTTCTGAAGGTGGTATTGCCACAATTAATGAATACCAAGATGACCCAGGAAGTCCATGCAAACAAGAAAATAGCAGAAGGAAAAGAAGAAAATCATCAGATAATCCAGAAGCCACACCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTAGAAAGCAGGTTTCAAGCAGCGTAGAAGTTGAGGTGGTTGATGATCCTTTGTTAACCTTGGGGACCCATGCCTTAACAGAAGAAAAGTCTCTGATCCCTGGTTCTCAGAAATCTGAGCAATATAATGATTGTCTGAAATACAAGCAAGACTACAATCCTCTTCCGAAGCTGCAATTGCCCCCCTCTTCTACAAATTTGAATTTAGACGATGTTCCTGTTCTTGAACTTTTTTCTATTTACGCCTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCACTGAAGTCTGAAATCCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATACCTCTCGAATGAGGGTTGCCAATCTGCATCCAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCGGAGTACCTTCTGATTAATGGCTCAGGATTTAAAACTGGTTTTGATCTTAAACATTTAATGTTCAGAAGTGATTACTACAAACAGCCTGTAATTGTGAAGGTGGAGATTCTCCAGTTTCTGTGTGATGATATGATTGAATCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTCTGATAACCGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACACTTTCAAGAAAAGAAGAGCTGCCATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTGGATGACACAACTGACTGGAACAGTGATGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCACGATGTGTGGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTGGATGAAATCACAAAGGTCACTTCGAGGAGCAGACTTATTAGGGATGGATATCGATGGCAGCGTCTATTTCAACAGCTGTGGTTACCTGTTAGTGTCAAGCTCATCTGAAGCAGGGCCAGTGTTCTATTACTATCACCGAAATGATATACATGTAGTAGTTGAAGCTCTAAAATCTATGGATCCTTTATATGGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAGAGCTAACTTGAGTGTGGGGGATAGTGTTTTTAATCAAAGTTCCAGCAAGAACATGCAGATGAAGGGAGAGTATTCTACTATGCATACATCTTTGGCACCTTTTACTTCAGAGACATGTTTGGACAAGAATCAGGCTAATGATCAAAGAAAGTTGGATGGAAATTCAACTACTGACTGTTGTATGCGACTTGGACAAGAACTTTCAAAAGTTGGGAACCGCCTAGATTCAATGACCACCATAGAAAGTCCTTCCGGTGCTTCAGATGGATCAGCTGATACAACGCAGGCAAGAACAGGCATCAACAATGTTCAGATGTATGGGCTCAATGATTCCAATAGATGTAATGAATCCTTGAATCAGTCAGGAATACCAGAGAGACACAATCCTGTTGGTGACTGCTCTTTGACATCTTCCAGCTTGGATGTGGGACGTAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCACCTCCCCTGACAGTAAGGAAACTTCAGAAGCACCTCATGGAATTAACTACATAAACTATTATAGCTTTGCTCGAACAGCTTCGTTTGTTGCACAGGAGTTGATGTGTAAGTCGCCTGAAAAGATGAATAAAATTTTTGCAATGTCTGAAGAAGAATTTATTTCAGACCAAGCAAAGGTTATTATGAAGAAATCTAGTGACTTTTGTTGGCCTAGTATTCCCAACCTGGATGCAGCTGCCCAAAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGCTAACGAAGACAGGGATTGTTTGTTTAATTCTGTTGTGAAGCCTGTTTGGGAAGTTTCTAATAGCACTTTAGTTGGGCTTCAATCCACGAATATCCAGAATGGACATCTTAGAGATATCATATGCCTTATCTTCTCTCTTGAGGTTCGGTTACGTGGGCTTTTATTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATGAGGATCTTTTGAAGACATCTGATTTTCTTCGTGTTAAGCGATTATTGCTTCTTTTAGAATCAAATTTGCGCCCTTTTACTCTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGATCCGCTATTCATATTGTGGTGAATTCATCACGCACATCTTCCAGGCATGGTATTGGAAAGAAAAGGGCCAGGTATTCAGATACGGAAACCAGTTCATCTTCAAATGGCGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTTGAAGGCTTTGCCTCACTCCTTGGTTACCAAGGCTGCCAGACAAGGTGGGTGTAGGAAGATACCAGGAATTTTATATCTTGAGAATTCAGACTTTGCACGGAGAAGCAGATTTGTTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAGAACAATCATCCTTTATGTGTATTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTTAAAAAATCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATATCTTATTGATTTTGGAAAGAGAAGAGCTATTCCAGATGTTGTTATTAAACATGGTTCTTTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTAGAGGAGTCTTATGTTCCAATGCATCTTCTAAAGAATTTTGAGGAAAGAAGGATTGTTCGCAAGTCCACTGATAAGAAACCTGGAAAAATTCTTGAGATTGGTAGAGTAAACAAGAAAATTCCTCAGCAAAGGGGATTTTCATATTTGTTTACCAGATTGGAAAGATCTGATTGTCATCAATGTGGGCACTGCAGCAAAGATGTTGCAATGAGGGATGCTGTGAGATGCCTCCATTGCAAAGGATATTTCCACAAGAGGCATGCCAGGAAATCAGGTGGCACAAGAACTACTGGAAGCACATATTCATGTCACAGATGTCAGGACGGGTTACATGCAAAGACTAATACTAATAAAAGAAAAGTGGACTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTGTGCCTTCAGTTTGTAAATCAGTAAACATCAAGGGCAACAAGAAGGCATTGAGTAAGGTACGACAGGTAAGATCTCGAAACAGTAAGAATATTCAATCAAGTGTACCTCTCCGCCGCTCTACTAGGAAGGCCAAATCCTTGTATATGCAAAGTCAAATGAATGGTGGACGTAAAAAAGGAAAGCCAGGTAAGAAGAATGTGGGTCGTAAAAAGGGAAAGCAAAGTAAACCCAAGAAGGTGACCTCTCAGGAGTCCAATGAAACTAATGTTGAATATACGGAGTTAACACTAACTACACGAAGAACAAGAACAAAATTCTGCAGCAGTTATTGGCTTAATGGTCTTCAGTTGTCTCGAAAGCCAAATGATGATCGAGTAATGCTATTTAAAGAGAAAAGGAGTGTTGTCTCCTCTGAAGATTTTTCTGGCTCTCTTGATTGTCTTAACTGTTGCCTTTGTTGTGGAAATGGATGCACCCTGAATTATATTGCGTGTGAAATATGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATATGGAGAATGTCAGACAACTTATTGGATTTAAGTGCCATGTTTGTCTGGATAGAACTGCTCCAATCTGTCCTCATATGAAGATTAATGCATTGTCTTGTCCTGAAAGCAATGCTGCAAATGAGTGTGCAGAGGAATTATCTAATCCTGTTTCTCTTCAACCTTTAAGTGAGGTTTGA 5241 0.4093 MELVGKTVRKEVKGVGFISGTVNSYDPSSGFFEIVYENGDSEELESSDVATLLQFQPESAKAKPRVGRKPKKRRRVERNSDAGAGSGNDRENLVREDSDIRGVLDGDVTSASAGDLGLDSGGLERNLDDITGNGGNLEGSVNGTVQENGVRETLREEIGLEDSLNKSFSGNVTCVKDELDLNARLNLDEDLNLNDGCSWPIATEDGLKRRDCIDLNLDVSNEDDVGLNPGHLGSGEAMQRECNFDLNVEVVCEEGKETRCDDDRNGHSEVGNVLFGKMGLLQKEDINVNNSSLENEGINGNLNHAFDVVKLEGIHVSADHPSKDGYLCLVEENGGDVHKEDTGTINFHQISNAISIRNSDFGEAQRVHCPSEGGIATINEYQDDPGSPCKQENSRRKRRKSSDNPEATPETVLRRSSRRASARKQVSSSVEVEVVDDPLLTLGTHALTEEKSLIPGSQKSEQYNDCLKYKQDYNPLPKLQLPPSSTNLNLDDVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKHLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLINGSGFKTGFDLKHLMFRSDYYKQPVIVKVEILQFLCDDMIESEAIRSELNRRSLITETDMGFDQNMYFDTFKKRRAAMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRAWMKSQRSLRGADLLGMDIDGSVYFNSCGYLLVSSSSEAGPVFYYYHRNDIHVVVEALKSMDPLYGGILMAIYKHWDIRANLSVGDSVFNQSSSKNMQMKGEYSTMHTSLAPFTSETCLDKNQANDQRKLDGNSTTDCCMRLGQELSKVGNRLDSMTTIESPSGASDGSADTTQARTGINNVQMYGLNDSNRCNESLNQSGIPERHNPVGDCSLTSSSLDVGRKINLRSVGASSTTSPDSKETSEAPHGINYINYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEFISDQAKVIMKKSSDFCWPSIPNLDAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEVSNSTLVGLQSTNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHEDLLKTSDFLRVKRLLLLLESNLRPFTLSADWLKHVDSVPTMGSAIHIVVNSSRTSSRHGIGKKRARYSDTETSSSSNGASGLGMYWWRGGRLSRKLFNLKALPHSLVTKAARQGGCRKIPGILYLENSDFARRSRFVAWRAAVEMSTSAEQLALQVRELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCTEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEERRIVRKSTDKKPGKILEIGRVNKKIPQQRGFSYLFTRLERSDCHQCGHCSKDVAMRDAVRCLHCKGYFHKRHARKSGGTRTTGSTYSCHRCQDGLHAKTNTNKRKVDSKLQKIQAKKRKTVPSVCKSVNIKGNKKALSKVRQVRSRNSKNIQSSVPLRRSTRKAKSLYMQSQMNGGRKKGKPGKKNVGRKKGKQSKPKKVTSQESNETNVEYTELTLTTRRTRTKFCSSYWLNGLQLSRKPNDDRVMLFKEKRSVVSSEDFSGSLDCLNCCLCCGNGCTLNYIACEICGDWFHGDAFGLNMENVRQLIGFKCHVCLDRTAPICPHMKINALSCPESNAANECAEELSNPVSLQPLSEV* 1747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00951 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1651 1710 IPR013083 -
Lapu11g00951 1746 ProSitePatterns Zinc finger PHD-type signature. 690 731 IPR019786 -
Lapu11g00951 1746 PANTHER PHD FINGER FAMILY PROTEIN 2 1709 - -
Lapu11g00951 1746 SUPERFAMILY FYVE/PHD zinc finger 1645 1706 IPR011011 -
Lapu11g00951 1746 MobiDBLite consensus disorder prediction 1531 1561 - -
Lapu11g00951 1746 MobiDBLite consensus disorder prediction 927 947 - -
Lapu11g00951 1746 CDD PHD1_AIRE 689 731 - -
Lapu11g00951 1746 MobiDBLite consensus disorder prediction 376 427 - -
Lapu11g00951 1746 ProSiteProfiles Zinc finger PHD-type profile. 687 734 IPR019787 -
Lapu11g00951 1746 ProSiteProfiles DDT domain profile. 492 552 IPR018501 -
Lapu11g00951 1746 MobiDBLite consensus disorder prediction 58 98 - -
Lapu11g00951 1746 MobiDBLite consensus disorder prediction 1566 1584 - -
Lapu11g00951 1746 MobiDBLite consensus disorder prediction 389 405 - -
Lapu11g00951 1746 MobiDBLite consensus disorder prediction 1518 1595 - -
Lapu11g00951 1746 CDD Tudor_AtPTM-like 4 54 IPR047365 -
Lapu11g00951 1746 Pfam PHD-finger 690 731 IPR019787 -
Lapu11g00951 1746 SMART PHD_3 689 732 IPR001965 -
Lapu11g00951 1746 SMART PHD_3 1658 1704 IPR001965 -
Lapu11g00951 1746 SMART PHD_3 1433 1480 IPR001965 -
Lapu11g00951 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 748 IPR013083 -
Lapu11g00951 1746 SMART testlast3 492 552 IPR018501 -
Lapu11g00951 1746 Pfam DDT domain 496 548 IPR018501 -
Lapu11g00951 1746 SUPERFAMILY FYVE/PHD zinc finger 674 732 IPR011011 -
Lapu11g00951 1746 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 616 638 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00951 Lapu-Chr11 11968064 11981900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00951 1 1715 PHD Transcription Factor Family AT5G12400 39.782 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lapu11g00951 DDT 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00951 - - vun:114169688 2917.49