Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00942 ATGGCTTTCTTTCTTCTCTTTTTCCTCTCCCTTCTTGCTTCTTCTGCCACTGCGTGCGATCGCTGCGTGCATCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCAGCTGGGGCATGTGGGTATGGGTCTTTGGCACTGGACGTAAGTGGTGGACATCTTGCAGCTGGTGTGGACTCTCTCTTTAAAAATGGAGCCGGTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAAGTGTTTGCAGCGAACAGGGTACTAGAGTGGTATTGACTGATCTTAATCGCAACAACCAAACTGACTTTGTGCTCAGCAGCAGAGCTTTCTTAGCCATGGCTCAGAAGGGCAAGGGTCAACAGATATTGAAACTTGGCATTGTTGACATTGAACACAAGAGAGTACCTTGTGAATACAAAAATCAGAATTTGGCGGTGCGTGTAGAAGAATCAAGCAAGAAGCCTGGTTACTTAGCAATTAAATTTTTGTACCAAGGAGGTCAAACAGAGATAGTAGGCGTTGATGTGGCTCAGGTCGGGTCTTCAAATTGGAGCTTCATGAGCAGAAACTACGGGGCAGTGTGGGACACAAGCAGGGTACCTGAAGGTGCATTGCAGTTTCGGTTAGTGGTAACAGCAGGGTATGATGGAAAGTGGATTTGGGCAAAGAAGGTCCTACCTGCTGATTGGAAGAATGGTGTCATATATGATTCAGGCGTTCAGATAACAGACATCGCACAAGAGGGTTGTTCCCCTTGTGATAGTTCCAACTGGTCATGA 783 0.4662 MAFFLLFFLSLLASSATACDRCVHQSKASYFSKASALSAGACGYGSLALDVSGGHLAAGVDSLFKNGAGCGACFQIRCKNPSVCSEQGTRVVLTDLNRNNQTDFVLSSRAFLAMAQKGKGQQILKLGIVDIEHKRVPCEYKNQNLAVRVEESSKKPGYLAIKFLYQGGQTEIVGVDVAQVGSSNWSFMSRNYGAVWDTSRVPEGALQFRLVVTAGYDGKWIWAKKVLPADWKNGVIYDSGVQITDIAQEGCSPCDSSNWS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00942 260 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Lapu11g00942 260 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Lapu11g00942 260 PANTHER EXPANSIN-B3 11 242 - -
Lapu11g00942 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Lapu11g00942 260 Gene3D - 140 244 IPR036749 -
Lapu11g00942 260 Gene3D - 10 139 IPR036908 -
Lapu11g00942 260 SMART dpbb_1 57 133 IPR007112 -
Lapu11g00942 260 FunFam Expansin-like A2 12 139 - -
Lapu11g00942 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Lapu11g00942 260 FunFam Expansin-like A2 140 244 - -
Lapu11g00942 260 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Lapu11g00942 260 PRINTS Major pollen allergen Lol pI signature 78 88 IPR005795 GO:0005576|GO:0019953
Lapu11g00942 260 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Lapu11g00942 260 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Lapu11g00942 260 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Lapu11g00942 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Lapu11g00942 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lapu11g00942 260 CDD DPBB_EXLA_N 17 140 - -
Lapu11g00942 260 Pfam Lytic transglycolase 57 120 IPR009009 -
Lapu11g00942 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Lapu11g00942 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Lapu11g00942 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Lapu11g00942 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Lapu11g00942 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00942 Lapu-Chr11 11880685 11883100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00942 16 260 Expansin Gene Family AT4G38400 65.587 7.66e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00942 - - gmx:100305884 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00942 11 11880685 11883100 Lapu11g00942 11 11880685 11883100 ECH