Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00933 ATGTGGAAAGCAGCTCTAACAGAATTAACAGCGACTGCATCTCTAATGTTCACCTTGACCACTTCCATTGTTGCATGCTTGGACTCAGACGAGGTCGATCCTAAGCTTCTTGTTCCCTTTGCAGTTTTCATCATAGCCTTTTTGTTCCTACTTGTGACAGTACCTCTCACTGGGGGCCACATGAGTCCCGTTTTCACATTCATTGCTGCTTTGAAGGGCGTTGTGACTCTCACCCGTGCTCTCATTTACGTCATAGCACAATGCATTGGCTCAATAGCTGGCTTCTTTATACTAAAGTGCGTCATGGACCCCAAATTAGCCTACACATATTCCTTGGGAGGTTGTGCCATTGATGGCCAAAGAGTGGATTCTGGCCTTAAGCCACAGGATGCTTTGATAGTGGAATTCACATGCACATTTGTGGTACTCTTTGTGGGAGTCACATTGGCATTTGACAAGAAAAGGTCTAGGGAACTGGGCTTGCCAATGGTGTGTTTGGTGGTGGCAGGAGCCATGGCATTGGCTGTGTTTGTGTCCATAACTGTAACTGGGCGGGCTGGTTATGCTGGAGTGGGCCTCAACCCAGCCAGATGCTTAGGCCCGGCATTGCTTCATGGAGGCTCACTTTGGAATGGACATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCATGCATAGTGTATTATGTTGTGTCTATCAACCTGCCAAAGGAGGGTTTGGTTTGGGTAGATGGAGAACATGATGTTCTAAACTTGGTCAAAGATGCCATGAATACGTGGAAAGCAGCTTTGGTAGAGTTAATTGCAACCGGTGCACTAATGTTCAGCCTAACGAGTGCCACTGTTGCATGTTTGGAACAAGGCGAGGTCAATCCCAAGCTTCTTATTCCCTTTGCAATCTTCATCATAGTCTTCGTGTTTCTGCTTGTGATGGTTCCTCTATCCGGGGGTCATATGAACCCTGTTTTCACATTCGTTGCGGCTTTAAAGGGTATTGTCACCCTTTCTCGTGCTCTCCTTTACGTCCTAGCACAATGCATTGGCTCAACAATTGGTTTCTTTGTACTCAAGAATGTGATGGAGCCAAAATTAGCAGACACATATTCTTTGGGAGGTTGTGTAATTGGTGAAAAAGAACAAATTTCTGCCATAACGCCACTACATGCTTTGTTGTTGGAATTCTCTTGCACACTTTTGGTGCTCTTTGTTGGTATCACGGTGGCATTTGATAAGAAAAGGAGCAAGGAATTGGGCTTTACAATGGTGTGTTTCGTGGTAGCAGCATCTATGGCACTGGCAGTTTTTCTGTCCATAACTTTAACCGGGAGGCCTGGTTATTCAGGCGTGGGCCTCAACCCAGCAAGATGTTTAGGCCCAGCCCTAATTCATGGAGGCTCACTATGGAATGGGCAATGGATTTTCTGGGTTGGGCCATTATTGGCGGGTATAATCTATTATAGTGTCTCCGTTAGCCTACCAACGAAGGGTTTGGATTGGGTGGATGGAGAACATGATATCTTAAAATTGACTATGGCTTTCTGTGGAACTACCCCTAACAAAGCCGATTTAAGCGATATTCCTTGA 1581 0.4586 MWKAALTELTATASLMFTLTTSIVACLDSDEVDPKLLVPFAVFIIAFLFLLVTVPLTGGHMSPVFTFIAALKGVVTLTRALIYVIAQCIGSIAGFFILKCVMDPKLAYTYSLGGCAIDGQRVDSGLKPQDALIVEFTCTFVVLFVGVTLAFDKKRSRELGLPMVCLVVAGAMALAVFVSITVTGRAGYAGVGLNPARCLGPALLHGGSLWNGHWVFWLGPFLACIVYYVVSINLPKEGLVWVDGEHDVLNLVKDAMNTWKAALVELIATGALMFSLTSATVACLEQGEVNPKLLIPFAIFIIVFVFLLVMVPLSGGHMNPVFTFVAALKGIVTLSRALLYVLAQCIGSTIGFFVLKNVMEPKLADTYSLGGCVIGEKEQISAITPLHALLLEFSCTLLVLFVGITVAFDKKRSKELGFTMVCFVVAASMALAVFLSITLTGRPGYSGVGLNPARCLGPALIHGGSLWNGQWIFWVGPLLAGIIYYSVSVSLPTKGLDWVDGEHDILKLTMAFCGTTPNKADLSDIP* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00933 526 PANTHER AQUAPORIN-LIKE 1 255 - -
Lapu11g00933 526 SUPERFAMILY Aquaporin-like 1 227 IPR023271 -
Lapu11g00933 526 Gene3D Glycerol uptake facilitator protein. 1 234 IPR023271 -
Lapu11g00933 526 PRINTS Major intrinsic protein family signature 42 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 PRINTS Major intrinsic protein family signature 134 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 PRINTS Major intrinsic protein family signature 3 22 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Lapu11g00933 526 SUPERFAMILY Aquaporin-like 256 483 IPR023271 -
Lapu11g00933 526 Pfam Major intrinsic protein 313 483 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 Pfam Major intrinsic protein 2 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00933 526 Gene3D Glycerol uptake facilitator protein. 245 492 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00933 Lapu-Chr11 11819514 11822916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00933 259 479 Major Intrinsic Protein MIP AT3G61430 30.131 2.66e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00933 K09866 - cic:CICLE_v10028106mg 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00933 11 11819514 11822916 Lapu11g00933 11 11819514 11822916 ECH