Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00927 ATGTTATTGTTTTCATCATCAAACATTCTTCATATGTCCTTTTCTGAATTCCTTCCAAGAATTCGAGTTATCCGTCTTAGGTTTCAACCCAATTATGGGTCTGAAGTTGAACCAATGGATTGTACAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGATTTAATGAACAATTTGTAGTTCTGGGCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAGGTGATACCATTCAATTGCTACAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATACGCTACACTAAATGAAGAATCTTGCGAGTTGGCTCGTGAGAAAAATGATCTCAGGGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAAGTTGAATAATCAGTATCAACAACAACTCAGGGCTGTGTCTCCATGGACTGCAATGGATCACTCAGTAATGGTAACTCCACCATCGTATCCATATCCAGTGCCAATGCCAATATCTCCTGCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATCATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCACCACATAGCCCCACCTCTTCATCCAGGTTTTCAGTCCCACATATCGGGAAAACAAGAGTCCAGAAACAAATCCAAGGAGAGCAAGGCTGAAAAACACGAGGATTCAAATGATGTCGCTGCGGACCAAACTCCCAGGTCTTCAGCAGACCAGGACTTGTCATCTGAACAAAGAAATTCTAGAGAGTTGTCAAGGAAGCAAAGCAGTTGCACTGAAGTGAGTTCGTTAGGTAGGTGTTCTTCATCTAGTAGCGTTCAGGATAGTTCATCAAGTAGTGTAGTTCACGAACACAAAGGCTAA 945 0.4148 MLLFSSSNILHMSFSEFLPRIRVIRLRFQPNYGSEVEPMDCTAARKTQKADREKLRRDRFNEQFVVLGNILDPDRPKNDKATILGDTIQLLQDLTSQVSKLKDEYATLNEESCELAREKNDLREEKASLKSDIEKLNNQYQQQLRAVSPWTAMDHSVMVTPPSYPYPVPMPISPAPIAMQPYPFYANQHSAIIPNPCSTYVPYLVPNTLVEQQSIHHIAPPLHPGFQSHISGKQESRNKSKESKAEKHEDSNDVAADQTPRSSADQDLSSEQRNSRELSRKQSSCTEVSSLGRCSSSSSVQDSSSSSVVHEHKG* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00927 314 MobiDBLite consensus disorder prediction 234 255 - -
Lapu11g00927 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Lapu11g00927 314 CDD bHLH_AtILR3_like 49 123 - -
Lapu11g00927 314 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Lapu11g00927 314 SMART finulus 50 100 IPR011598 GO:0046983
Lapu11g00927 314 MobiDBLite consensus disorder prediction 219 314 - -
Lapu11g00927 314 Gene3D - 39 93 IPR036638 GO:0046983
Lapu11g00927 314 MobiDBLite consensus disorder prediction 281 307 - -
Lapu11g00927 314 PANTHER TRANSCRIPTION FACTOR BHLH121 29 312 IPR044579 GO:0003700|GO:0006879
Lapu11g00927 314 Coils Coil 84 146 - -
Lapu11g00927 314 Gene3D - 94 149 - -
Lapu11g00927 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00927 Lapu-Chr11 11797471 11800051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00927 34 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.911 2.96e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g00927 HLH 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00927 - - gmx:100817000 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00927 11 11797471 11800051 Lapu11g00927 11 11797471 11800051 ECH