Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g00901 | ATGTCTACCGCATCAGACTTGGACCTCCCAATTAGTGATGATGATGGTGATGGATCGGATGCTGGTAGCATGGACGAGGAGGAGAAGACAGCAGGCGAGGATGACTACATAGAAGGAGCTGAGAGCAATGTTACCGACTATCAGAGCACATCAGAGGAGCAGCAGCACTACACAGTTTTGACCGAATCTGAAATCAAGCGACTTCAACAAGAGGACATCAACAAGGTTTCCTGCGTTCTCTTCATACCAAGAACTGTTGCTTGCCTTTTGCTCATCCACCATGAGTGGAGCGTGGTCAAAGTGCACGAAGCATGGTTCAACAACGAAGAAAGAGTTCGCAAAGTTCTAGGGTTGCCAATGCAGCATGAAGGCTTGCAGGTAGGTTTTCCCAACTCAAAATCCCTCAAATGTGATATATGCTTAAATGTTGTTTCGGGCGATAAGGTTAGGTCAGGTGGTTGTGGGCATCCATATTGCATCCTTTGCTGGAAGCAGTACGTGGATGCAAGCATCGACGGGGGCCCTGAAAGGTGCTTGAAACTCAGATGCCCCCAACCCAACTGTGATGTATCTGTGGGTGGAGACATGATCCACGAATTCGCAAGTGAGTCAAAGAGGAACAGGTACGATTGGTTTGTGTTCCGATCTTACGTTGAAAACAACAAGAAGGTGAAGTGGTGTCCTGCTCCAGCGTGTGAGTATGCTGTGAGATATGAAGCGGACGGTGTTAGAAGAAATTCAGATGTTACCTGTCTTTGTTGGCACTCGTTTTGTTGGAGCTGTGGGGAAGAAGCTCACAGCCCCGTGGATTGTGAAACCGCAAAACACTGGATCATGAAGAATGATCCCGAATCATCAGAGAACTATGCTTGGATTCTGACTAACACCAAACCCTGTCCTAACTGCAAGAAACCCATCGAGAAGGCTGAAGGGTGCGTGCTGATGGAATGCAGAGAGTACTGCGATGGTTGGAGAAAGAAGGAATCGTCAAGAAAATACGCGGTGAGGCGTGGGAGGGAGGTGATGAATGGAGGGTATAAGAAGAGACTGAGCATGTTGTATGGAAGGTCAGAAGATGAGTTTGTGGTGATAGAGGTGGCGTGGCAACAGGTGGTTGAGTGCCTGAGAGTGCTGAAATGGAGCCATGCGTATGGTTACTATGTACCTTCCACCGAGAAAGCGAAGGGAGAATATTTTGAGTACACTCAACACCAGGCTGAGGCTGTTCTGGAGAAGCTTCGACACTGCCTTCAATGGGAAGTGGATGAGTTCTTAAATGCTAAGGAGGCAATCAAAAGATTTGAAAATTTGCTTTGGAAGTTAGGGGAACTTACCCGTGTCACCAAGGCCTACTTTCAGAATTTGGTGTTAGCACTGGAGAAAGGACTGGAAGAAGTCCACGTCAGGAGCTATAGTCGCCGGAAAAGAGAGGTGGAGGAGGTGGCGGACACCTCTTCCCCAAACACAAGGAGAACCAGAACCACCTCTTAG | 1491 | 0.4816 | MSTASDLDLPISDDDGDGSDAGSMDEEEKTAGEDDYIEGAESNVTDYQSTSEEQQHYTVLTESEIKRLQQEDINKVSCVLFIPRTVACLLLIHHEWSVVKVHEAWFNNEERVRKVLGLPMQHEGLQVGFPNSKSLKCDICLNVVSGDKVRSGGCGHPYCILCWKQYVDASIDGGPERCLKLRCPQPNCDVSVGGDMIHEFASESKRNRYDWFVFRSYVENNKKVKWCPAPACEYAVRYEADGVRRNSDVTCLCWHSFCWSCGEEAHSPVDCETAKHWIMKNDPESSENYAWILTNTKPCPNCKKPIEKAEGCVLMECREYCDGWRKKESSRKYAVRRGREVMNGGYKKRLSMLYGRSEDEFVVIEVAWQQVVECLRVLKWSHAYGYYVPSTEKAKGEYFEYTQHQAEAVLEKLRHCLQWEVDEFLNAKEAIKRFENLLWKLGELTRVTKAYFQNLVLALEKGLEEVHVRSYSRRKREVEEVADTSSPNTRRTRTTS* | 497 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g00901 | 496 | MobiDBLite | consensus disorder prediction | 10 | 34 | - | - | |
Lapu11g00901 | 496 | Gene3D | - | 267 | 321 | - | - | |
Lapu11g00901 | 496 | Gene3D | - | 322 | 467 | - | - | |
Lapu11g00901 | 496 | ProSiteProfiles | Zinc finger RING-type profile. | 137 | 184 | IPR001841 | - | |
Lapu11g00901 | 496 | FunFam | RBR-type E3 ubiquitin transferase | 131 | 221 | - | - | |
Lapu11g00901 | 496 | Pfam | IBR domain, a half RING-finger domain | 208 | 271 | IPR002867 | GO:0008270 | |
Lapu11g00901 | 496 | SUPERFAMILY | RING/U-box | 208 | 278 | - | - | |
Lapu11g00901 | 496 | ProSiteProfiles | TRIAD supradomain profile. | 133 | 350 | IPR044066 | - | |
Lapu11g00901 | 496 | SUPERFAMILY | RING/U-box | 132 | 219 | - | - | |
Lapu11g00901 | 496 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 221 | IPR013083 | - | |
Lapu11g00901 | 496 | SUPERFAMILY | RING/U-box | 291 | 321 | - | - | |
Lapu11g00901 | 496 | SMART | ibrneu5 | 207 | 271 | IPR002867 | GO:0008270 | |
Lapu11g00901 | 496 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Lapu11g00901 | 496 | MobiDBLite | consensus disorder prediction | 477 | 496 | - | - | |
Lapu11g00901 | 496 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 51 | 380 | IPR031127 | GO:0004842|GO:0016567 | |
Lapu11g00901 | 496 | CDD | BRcat_RBR_ANKIB1 | 215 | 280 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g00901 | Lapu-Chr11 | 11605709 | 11607328 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g00901 | 32 | 467 | ARIADNE family | AT1G65430 | 38.104 | 3.65e-118 | 357 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g00901 | K11968 | - | gmx:100801350 | 589.726 |