Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00901 ATGTCTACCGCATCAGACTTGGACCTCCCAATTAGTGATGATGATGGTGATGGATCGGATGCTGGTAGCATGGACGAGGAGGAGAAGACAGCAGGCGAGGATGACTACATAGAAGGAGCTGAGAGCAATGTTACCGACTATCAGAGCACATCAGAGGAGCAGCAGCACTACACAGTTTTGACCGAATCTGAAATCAAGCGACTTCAACAAGAGGACATCAACAAGGTTTCCTGCGTTCTCTTCATACCAAGAACTGTTGCTTGCCTTTTGCTCATCCACCATGAGTGGAGCGTGGTCAAAGTGCACGAAGCATGGTTCAACAACGAAGAAAGAGTTCGCAAAGTTCTAGGGTTGCCAATGCAGCATGAAGGCTTGCAGGTAGGTTTTCCCAACTCAAAATCCCTCAAATGTGATATATGCTTAAATGTTGTTTCGGGCGATAAGGTTAGGTCAGGTGGTTGTGGGCATCCATATTGCATCCTTTGCTGGAAGCAGTACGTGGATGCAAGCATCGACGGGGGCCCTGAAAGGTGCTTGAAACTCAGATGCCCCCAACCCAACTGTGATGTATCTGTGGGTGGAGACATGATCCACGAATTCGCAAGTGAGTCAAAGAGGAACAGGTACGATTGGTTTGTGTTCCGATCTTACGTTGAAAACAACAAGAAGGTGAAGTGGTGTCCTGCTCCAGCGTGTGAGTATGCTGTGAGATATGAAGCGGACGGTGTTAGAAGAAATTCAGATGTTACCTGTCTTTGTTGGCACTCGTTTTGTTGGAGCTGTGGGGAAGAAGCTCACAGCCCCGTGGATTGTGAAACCGCAAAACACTGGATCATGAAGAATGATCCCGAATCATCAGAGAACTATGCTTGGATTCTGACTAACACCAAACCCTGTCCTAACTGCAAGAAACCCATCGAGAAGGCTGAAGGGTGCGTGCTGATGGAATGCAGAGAGTACTGCGATGGTTGGAGAAAGAAGGAATCGTCAAGAAAATACGCGGTGAGGCGTGGGAGGGAGGTGATGAATGGAGGGTATAAGAAGAGACTGAGCATGTTGTATGGAAGGTCAGAAGATGAGTTTGTGGTGATAGAGGTGGCGTGGCAACAGGTGGTTGAGTGCCTGAGAGTGCTGAAATGGAGCCATGCGTATGGTTACTATGTACCTTCCACCGAGAAAGCGAAGGGAGAATATTTTGAGTACACTCAACACCAGGCTGAGGCTGTTCTGGAGAAGCTTCGACACTGCCTTCAATGGGAAGTGGATGAGTTCTTAAATGCTAAGGAGGCAATCAAAAGATTTGAAAATTTGCTTTGGAAGTTAGGGGAACTTACCCGTGTCACCAAGGCCTACTTTCAGAATTTGGTGTTAGCACTGGAGAAAGGACTGGAAGAAGTCCACGTCAGGAGCTATAGTCGCCGGAAAAGAGAGGTGGAGGAGGTGGCGGACACCTCTTCCCCAAACACAAGGAGAACCAGAACCACCTCTTAG 1491 0.4816 MSTASDLDLPISDDDGDGSDAGSMDEEEKTAGEDDYIEGAESNVTDYQSTSEEQQHYTVLTESEIKRLQQEDINKVSCVLFIPRTVACLLLIHHEWSVVKVHEAWFNNEERVRKVLGLPMQHEGLQVGFPNSKSLKCDICLNVVSGDKVRSGGCGHPYCILCWKQYVDASIDGGPERCLKLRCPQPNCDVSVGGDMIHEFASESKRNRYDWFVFRSYVENNKKVKWCPAPACEYAVRYEADGVRRNSDVTCLCWHSFCWSCGEEAHSPVDCETAKHWIMKNDPESSENYAWILTNTKPCPNCKKPIEKAEGCVLMECREYCDGWRKKESSRKYAVRRGREVMNGGYKKRLSMLYGRSEDEFVVIEVAWQQVVECLRVLKWSHAYGYYVPSTEKAKGEYFEYTQHQAEAVLEKLRHCLQWEVDEFLNAKEAIKRFENLLWKLGELTRVTKAYFQNLVLALEKGLEEVHVRSYSRRKREVEEVADTSSPNTRRTRTTS* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00901 496 MobiDBLite consensus disorder prediction 10 34 - -
Lapu11g00901 496 Gene3D - 267 321 - -
Lapu11g00901 496 Gene3D - 322 467 - -
Lapu11g00901 496 ProSiteProfiles Zinc finger RING-type profile. 137 184 IPR001841 -
Lapu11g00901 496 FunFam RBR-type E3 ubiquitin transferase 131 221 - -
Lapu11g00901 496 Pfam IBR domain, a half RING-finger domain 208 271 IPR002867 GO:0008270
Lapu11g00901 496 SUPERFAMILY RING/U-box 208 278 - -
Lapu11g00901 496 ProSiteProfiles TRIAD supradomain profile. 133 350 IPR044066 -
Lapu11g00901 496 SUPERFAMILY RING/U-box 132 219 - -
Lapu11g00901 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 221 IPR013083 -
Lapu11g00901 496 SUPERFAMILY RING/U-box 291 321 - -
Lapu11g00901 496 SMART ibrneu5 207 271 IPR002867 GO:0008270
Lapu11g00901 496 MobiDBLite consensus disorder prediction 1 53 - -
Lapu11g00901 496 MobiDBLite consensus disorder prediction 477 496 - -
Lapu11g00901 496 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 380 IPR031127 GO:0004842|GO:0016567
Lapu11g00901 496 CDD BRcat_RBR_ANKIB1 215 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00901 Lapu-Chr11 11605709 11607328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00901 32 467 ARIADNE family AT1G65430 38.104 3.65e-118 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00901 K11968 - gmx:100801350 589.726