Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00895 ATGGGCAAATCAAGCAAGAAATCAGCTGTCAAGGTTGACGCTGCTCCAGCCGTTGTTCCGCCATCCAAATCCACCAAAAAGGGAGGCAAGAGGCAAGCTGAAGAAGAAAGTGAGAAGCAAGTTAGTGCAAAAAAACAGAAGATAGAGGAAGTTGCTCAGAAGCAGAAAAAGGAAGTAAAGGTGCAAAAGAAGAAGGAAAGTAGTTCTGATGATTCATCTTCTGAATCTGAAGATGAGAAACCTGCTGTCAAAACTGCTGCTCTTCCTAAGAAGGCACCTGCTAAAAATGGTGCTCTAAAAGCTCCTGCAAATAAAGGAAAGCCAGCCTCCAGTTCTTCTGATTCTTCTGAGGACGACTCTTCTGATCAGGATGAAGTGACTGCTAATAAGTCACAGAAAGGGACTCTGGAGAAACCAAAGAAAGCTGCACCTGTGCCAAAGAAGAAGGACAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGTACCTAAAGTGGCTGTGCCTTCTAAAATGGCACCTGCTAAAAATGGTGCCCCAGCAAAGAAAGGCAAGCCAGCTAGCAGCTCCAGTTCTGAATCTTCTGAAGACGACTCCTCTGAAGATGAGAAACCTGCTGCTAAGAATGGTTCTACAACTGCCCCTGCAAAGAAAGGCAAGCCAGATGCTATTTCAAGGTCTTCAGATTCATCCGATGACTCTTCTGACGAGGAAGATGTTCCAAAAGCCAAGGTGGTCCCTGCTGCAGGGAAGAACATACCATCTTCTAAAAAGGAAACTCAGCCTATTGGTAGTTCTGATTCTGATAGCAGCTCTGACGAAGACACTAAAAAGAAAATATCTGCCACTACAAGGCTGCCCGCATCATCAGTTGCTCCAGCTAAGAAAGTGGAAAGCTCAGATGATGATTCAAGTGAAAGCTCTGACGAAGATAGTGATGTAAAGCCCACTCCTGTGTCAAAGCCTTCTGCTGCGTCAAAGAAGAAAGTTGACAGCTCTGATGATGATGATGAGTCTTCTGATAGTGAATCTGAAGAGGAAAAGAAAATTTCAAAAGCTGCTAATGTTAGCAAGAAACCAGCTCCTGTTGTGAAGACTGCTAAAAAAGATTCTACTGAAAGTTCATCTGAGAGTGATTCTTCAGATGATGAGGAGGGGAAGAAGATGGATGTAGACGAGGATGATAGTTCTGATGAAAGTGAAAAGCCGCAAAAGAAGACTGTGAAGACTGTGAAAGAAAGCAATGACAGTTCAGATGATGATAGTGAGGAAGAAAGTGAGGAGGAACCCTCCAAAACTCCACAGAAACGAGCTAGGGATGTTGAGATGGTTGATGCTGCTTCATCTGGAAAGAAAGCTCCCAATACCCCAATTACACCAAGTGCAGAAAGTGGTACTTCGAATACTCTTTTTGTTGGGAACCTGGCATACAGTGTTGAACGAGCTGATGTAGAAAATTTCTTCAATGGTTGTGGAGAAGTTGTTGATGTTCGTCTTGCTACAGACGAAGAGGGGAATTTTAAAGGATTTGGACATGTTGAGTTTGCAACAGTTGAGGCTGCCCAGAAAGCCCTTGAGTTGAATGGAGAAGAACTATTGAATCGTCCACTGCGGCTGGATTTAGCCAAGTCCCGGGACAGGAGTGCCTATACTCCCAATAGCAGCAACTGGAACAACTCATCGCAGAAAAGTGGAAGAGGCCAGTCTCAAACTCTGTTTGTAAGGGGCTTTGATAAATCCCTTGGGGAGGATGAGATAAGAGCTAGTTTGCAAGAACATTTTGGTTCTTGTGGAGATATTACAAGGGTATCAATTCCCAAAGATTACGAGACTGGTGGTGTTAAGGGGTTTGCTTACATGGACTTTGGTGATGCTGATAGCATGAGCAAAGCTCTAGAACTCCATGAAACTGAACTCGGAGGTTATACCCTCTCAGTGGATGAAGCCAAGCCTAGGGATAATCAAGGCTCTGGTGGAAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGATTTGGTGGAAGAGGTGGCAGTGGAGGTAGATTTGGTGGCAGCGGTGGTGGCCGATTTGGTGGCAGCGGTGGTGGCCGATTTGGTGGAAGAGGTGGCAGCGGTGGTAGATTTGGTGGAAGAGGCGGTGGTGGAAGAGGTGGCGGTGGAAGGGGTCGTGGGCCACCAAATAGATCCATCACTGGTGAAGGGAAAAAGACCAAGTTTGCCGATGAAGACTAG 2238 0.4562 MGKSSKKSAVKVDAAPAVVPPSKSTKKGGKRQAEEESEKQVSAKKQKIEEVAQKQKKEVKVQKKKESSSDDSSSESEDEKPAVKTAALPKKAPAKNGALKAPANKGKPASSSSDSSEDDSSDQDEVTANKSQKGTLEKPKKAAPVPKKKDSSSDDSSSESEDEKPVPKVAVPSKMAPAKNGAPAKKGKPASSSSSESSEDDSSEDEKPAAKNGSTTAPAKKGKPDAISRSSDSSDDSSDEEDVPKAKVVPAAGKNIPSSKKETQPIGSSDSDSSSDEDTKKKISATTRLPASSVAPAKKVESSDDDSSESSDEDSDVKPTPVSKPSAASKKKVDSSDDDDESSDSESEEEKKISKAANVSKKPAPVVKTAKKDSTESSSESDSSDDEEGKKMDVDEDDSSDESEKPQKKTVKTVKESNDSSDDDSEEESEEEPSKTPQKRARDVEMVDAASSGKKAPNTPITPSAESGTSNTLFVGNLAYSVERADVENFFNGCGEVVDVRLATDEEGNFKGFGHVEFATVEAAQKALELNGEELLNRPLRLDLAKSRDRSAYTPNSSNWNNSSQKSGRGQSQTLFVRGFDKSLGEDEIRASLQEHFGSCGDITRVSIPKDYETGGVKGFAYMDFGDADSMSKALELHETELGGYTLSVDEAKPRDNQGSGGRGGGGRGGGGRFGGRGGSGGRFGGSGGGRFGGSGGGRFGGRGGSGGRFGGRGGGGRGGGGRGRGPPNRSITGEGKKTKFADED* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00895 745 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 575 647 IPR000504 GO:0003723
Lapu11g00895 745 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 541 IPR000504 GO:0003723
Lapu11g00895 745 MobiDBLite consensus disorder prediction 134 168 - -
Lapu11g00895 745 Coils Coil 34 65 - -
Lapu11g00895 745 MobiDBLite consensus disorder prediction 27 85 - -
Lapu11g00895 745 CDD RRM1_NUCLs 472 548 IPR034349 -
Lapu11g00895 745 FunFam Nucleolin 2 558 699 - -
Lapu11g00895 745 MobiDBLite consensus disorder prediction 225 247 - -
Lapu11g00895 745 SUPERFAMILY RNA-binding domain, RBD 460 570 IPR035979 GO:0003676
Lapu11g00895 745 MobiDBLite consensus disorder prediction 547 572 - -
Lapu11g00895 745 MobiDBLite consensus disorder prediction 401 419 - -
Lapu11g00895 745 Gene3D - 395 556 IPR012677 -
Lapu11g00895 745 SMART rrm1_1 472 543 IPR000504 GO:0003723
Lapu11g00895 745 SMART rrm1_1 574 650 IPR000504 GO:0003723
Lapu11g00895 745 MobiDBLite consensus disorder prediction 1 470 - -
Lapu11g00895 745 Gene3D - 557 691 IPR012677 -
Lapu11g00895 745 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 164 619 - -
Lapu11g00895 745 MobiDBLite consensus disorder prediction 646 745 - -
Lapu11g00895 745 MobiDBLite consensus disorder prediction 432 449 - -
Lapu11g00895 745 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 573 654 IPR000504 GO:0003723
Lapu11g00895 745 MobiDBLite consensus disorder prediction 366 388 - -
Lapu11g00895 745 MobiDBLite consensus disorder prediction 455 470 - -
Lapu11g00895 745 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 547 IPR000504 GO:0003723
Lapu11g00895 745 MobiDBLite consensus disorder prediction 550 572 - -
Lapu11g00895 745 MobiDBLite consensus disorder prediction 257 272 - -
Lapu11g00895 745 SUPERFAMILY RNA-binding domain, RBD 560 685 IPR035979 GO:0003676
Lapu11g00895 745 CDD RRM2_NUCLs 574 652 IPR034350 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00895 Lapu-Chr11 11572338 11578669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00895 470 648 Eukaryotic Initiation Factors Gene Family AT4G34110 27.072 5.09e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00895 K11294 - gmx:100779929 495.352