Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00885 ATGGAGCAACCAAGTGTGCCGGTTCTGCAATGGATGCGCCATCCTGTCGACGTCACTCGCAATGAACAACTCTCCCTCCGCAGGCTTCCTTTTCTCGACCGCGGGTTAAGGTCGGCACTAGAGAACATGGGAATCTCGAAGCTGTTCCCGGTTCAAGTCGGGCTTTGGCAAGAGACCGTTGGACCAGGTAACTTTGAGCGAGACCTTTGCATAAACTCGCCCACAGGAAGTGGTAAAACCTTGGCCTATGCACTTCCCATCGTGCAAAAGTTGTTACCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATGCTCTTGCATTGCCTTTAGGCTTGCGTGTGGGCTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAACTTTCTAGTCTCGTGTACCTACCGATGGAAGAGGAGTGTCTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTGTCTAGGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCAGATCGATTGCTCCGGGAGGACTATCAGTCCTGGTTACCCACTGTACTTAAATCGACCCAATCTAGCAACAATGATGATGTTTTCGGATTGGGGTTCCCGTTTTCTTCCTGGAATAGAAGATGTAGTGGAGTTGAGAGGGGGTCCAAGCCTCACTCTAGGCTGGTAAAGGTGGTTTTATCTGCGACATTAACTCGAGACCCAGGGAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTTCTCAGTGCTGGAAAAATGCGTTATAGGCTTCCAGAAAATTTAGAATCATACAAACTGATATGTGAAAGAAAGGTCAAACCCCTATACTTGGTTGCCCTTTTGAAATCTCTGGGGGAGGAAAAATGCATAGTTTTTACAAGATCGGTGGACTCAACACATCGTCTTTGCAAATTGCTGAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCATCAACATCAACGTGTAAGAAGCAAGACACTGAATGAGTTTCGAAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGGAGTAAAAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCTGGCCAGACTGGGTGTTGCTTCACATTGATGTCAAATGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCTGAAGGTGGTGCTTGTCTTGAGCATACTGTTCCATTCCATTTGATTGAAGAACTTCATAGTCCCTACCAATCAGCACTATCAAAATTGAAGGAGATAATATTGGAGAGTCGGAGGAAACCCAAGGATAACTCCTCTCAATTGAAAAAAAGAGAGAAAAGAGAAAAAGTATTGGGAATAGCTGCATATGATTTATAG 1527 0.4473 MEQPSVPVLQWMRHPVDVTRNEQLSLRRLPFLDRGLRSALENMGISKLFPVQVGLWQETVGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPTSTVKCLRALVVVPTRDLALQVKQVFDALALPLGLRVGLAVGQSSVADELSSLVYLPMEEECLDPGFLSPFWFQSKVDILVATPGRLVDHVNLSRGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSTQSSNNDDVFGLGFPFSSWNRRCSGVERGSKPHSRLVKVVLSATLTRDPGRLVQLNLHHPLFLSAGKMRYRLPENLESYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFEDLQIDIKEYSGHQHQRVRSKTLNEFRKGEFQVLVSSDAMTRGMDVEGVKNVINYDMPKYIKTYVHRAGRTARAGQTGCCFTLMSNDEVGRFKKLMKKAEGGACLEHTVPFHLIEELHSPYQSALSKLKEIILESRRKPKDNSSQLKKREKREKVLGIAAYDL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00885 508 CDD SF2_C_DEAD 297 428 - -
Lapu11g00885 508 SMART helicmild6 336 420 IPR001650 -
Lapu11g00885 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 284 IPR014001 -
Lapu11g00885 508 PANTHER RNA HELICASE 32 473 - -
Lapu11g00885 508 Pfam DEAD/DEAH box helicase 66 270 IPR011545 GO:0003676|GO:0005524
Lapu11g00885 508 Gene3D - 295 504 IPR027417 -
Lapu11g00885 508 Pfam Helicase conserved C-terminal domain 309 420 IPR001650 -
Lapu11g00885 508 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 199 207 IPR000629 -
Lapu11g00885 508 Gene3D - 13 287 IPR027417 -
Lapu11g00885 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 441 IPR027417 -
Lapu11g00885 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 462 IPR001650 -
Lapu11g00885 508 SMART ultradead3 44 300 IPR014001 -
Lapu11g00885 508 CDD DEADc_DDX51 36 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00885 Lapu-Chr11 11467667 11474013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00885 68 433 Eukaryotic Initiation Factors Gene Family AT1G72730 25.683 1.38e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00885 K14807 - gmx:100789424 692.96