Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00879 ATGAGTTCTCGGACGGGCAAGGGACCTGCTGTGAGAAGCTACCGGAGGAGAAAGACAGTTCTGGACCTTGACCTTAATCGCGTACCGGCTGGTGACAATCGTGAGCAGGAGGGACCCTCAATTCAGTCAGTGCCTCATGAAGTTATGGGTGAACAGCAGCCACGGGCCTCTCAACCAACGATGATTGATGTGGAAGACATCGATGATGATGTTGTTGAATGTACCCCAAGGGCTTTTGCTGAGGCTAAAAACAAATCAAGAAGAAACCGTGGGAGGACTATAGTTGATGTTGAACTAGAAGATCAGACTAGGCGCAACAAACGCAGAAGAGAATTGCGAAATCAAACAATTATTAATTGTGAGAAGTATATAAATTTGGAAGGAAGTAGCAGTTCTATGAGTGATAGTGCTAAAAAGCTTCCTGAACCTCGAATTGAGCCTGTTTTCAACTGTCCAATATGTATGGGACCTTTGGCAGAAGAAATGTCAACAAGATGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGCGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTCATAAGGGTGTTTCTCCCATCAACTAGTTGA 621 0.4396 MSSRTGKGPAVRSYRRRKTVLDLDLNRVPAGDNREQEGPSIQSVPHEVMGEQQPRASQPTMIDVEDIDDDVVECTPRAFAEAKNKSRRNRGRTIVDVELEDQTRRNKRRRELRNQTIINCEKYINLEGSSSSMSDSAKKLPEPRIEPVFNCPICMGPLAEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00879 206 SMART ring_2 151 188 IPR001841 -
Lapu11g00879 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
Lapu11g00879 206 MobiDBLite consensus disorder prediction 15 31 - -
Lapu11g00879 206 SUPERFAMILY RING/U-box 150 195 - -
Lapu11g00879 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Lapu11g00879 206 PANTHER ELFLESS, ISOFORM B 1 206 - -
Lapu11g00879 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 205 IPR013083 -
Lapu11g00879 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lapu11g00879 206 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00879 Lapu-Chr11 11412819 11417844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00879 12 205 C3H Transcription Factor Family AT5G48655 53.171 3.41e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00879 K22651 - gmx:100306616 318.161