Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00877 ATGGCAGTGATCATGCAACAGCAGCAGCAGCAACAACAGCAACAGCAGAACCCTTCTGCACTGGTGCCACCACACCTCAAAAATCCCCAATCCTCCACAACCACAACCACCGCCGCCACCACAACCACCGCCGCCACTTCCATTAGGTCGCCCTCCGCGCAGTCGCCGCTCTCCGTCGTTACTCCCCTCCGACAAACCCCGCTCTCCTCGCATCCGGTGCCAGTTACGGCGGTGGAGTCTGCTTTGACGGCGGTTCCGACGTGTCCGCTGGTGAGAGTCCGTCTCTCGGACATTGCCCCCTATGATGGGGCACCGGCGGGGCCATATCTCAGAGCAATGGAGGCGCTGTGTGGGTCTCTGCTGCGACACAATGCCGCGTTGATCGAATTGGGGAACGAGGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCAAGGTTGTTTTTCAGAAGTAGGGCCCAACTAGGTGTTGGGAAGGGTAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTATTCTCCCCCCTGCATGGCTGATATATTTAGATGCATGGGAAAGGTGTCTCGATCTGCCTTGAGTGCCATTGCAAGATATTTACGTCTTAGAAGCGATGTTTTTAACCATTTGCTTGATGATGCTCCGTTGCCTGCTAATGAGGTCTCTTCGTCAGTTCTTGTTGCCACATACTCACATTCTTCTTTACAAAATGGAAGGGGTGCTATTGGAGGTGGTAAGCCTACCATGAATGGTGAAGTTGAGAAGGGATTGTTGACATTGATATCTTCTGACACTCCTGGTCTTCAGATATGTGACCCCAGTGGTCGCTGGTATCTGGCAGACAGTGGTTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGTCATGCTACTGCTGGTCTACGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTATGAGTCCTAATGGCGGAGGAAGGACTTCTATAGCATATAGACTAATGCCACAGGGCAACGCCATATTAGATTGCTCCCCAATTGCAGCAGCTGGCCATGCTATTCCCCAAAGTTATGTTCGAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCGGAAGAATTGATAGGCAGCAGATGTGATAATGCTGATGTTGCTGCTCAAAACAGTATGAACAAGGAGCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGTTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTCATTGAAACATCCAGATGTACTCTCTGCAATACAGAAATTGAAACTGGTTCTTTGATCCCTAATCTTGCTCTCAGAGCTGCAGCTGCTGCTATCAAGCATGAGGATGAACGGAGGTTATTTCGTAATGCTGCTCTCCGAAAGAGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTGAACAGGGAAAATGGGGATTTTACTGCTGCTGATGGACTTCAGCGGGGCGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGAAGAACACCAGAAAAGTTTGTTGGGAAAGAAGCTGTGATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTCAATATCATTGAAACTGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGGAAGCTCTTAGTCTCATCAGCGGACCAGTGTCCCTCTCTACCAATTCAAAACAGCAGCTCTTAA 1770 0.4853 MAVIMQQQQQQQQQQQNPSALVPPHLKNPQSSTTTTTAATTTTAATSIRSPSAQSPLSVVTPLRQTPLSSHPVPVTAVESALTAVPTCPLVRVRLSDIAPYDGAPAGPYLRAMEALCGSLLRHNAALIELGNEDTALMRCGLEGARLFFRSRAQLGVGKGSRGVYMYRAGRALEDWDYSPPCMADIFRCMGKVSRSALSAIARYLRLRSDVFNHLLDDAPLPANEVSSSVLVATYSHSSLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQICDPSGRWYLADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYFMSPNGGGRTSIAYRLMPQGNAILDCSPIAAAGHAIPQSYVRISVSQFMDDLAAEELIGSRCDNADVAAQNSMNKEPSLRSVLSDPLSGTFLEDAMFVSCGHSFGGLMLRRVIETSRCTLCNTEIETGSLIPNLALRAAAAAIKHEDERRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFTAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIETGENVRLQYRSLRKLLVSSADQCPSLPIQNSSS* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00877 589 MobiDBLite consensus disorder prediction 1 58 - -
Lapu11g00877 589 SUPERFAMILY RING/U-box 400 466 - -
Lapu11g00877 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 469 IPR013083 -
Lapu11g00877 589 Gene3D - 172 378 IPR027443 -
Lapu11g00877 589 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 88 574 - -
Lapu11g00877 589 SUPERFAMILY Clavaminate synthase-like 181 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00877 Lapu-Chr11 11388840 11397992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00877 400 570 Plant U-box Gene Family AT5G05230 40.351 1.83e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00877 - - gmx:100807199 1029.62