Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00873 ATGGCATCGGCCTTCGTCAAGCTCGATGATTCTCCTATGTTCCAGAAACAGTTATTTTCGCTTGAAGAAACAACTGATGAGTTAAAGGATCGGTGCCAGAAACTATATAATGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATGTCCTTTGCCGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTTAGTGTATCAATTGGAGGGCCTGTCATAACTAAGTTTATTACCACACTGCGTGAGCTAGCTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGTCTGATGGAGTTTATGAACATTGATTTGCAAGATACAAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCTGAAGATGTTGTTGCTGGATTAGAAGAGGATCTACAAAATTCAAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGCAAAAAAGAAGTACGAGTTCTTGGAGTCCATTAGTGCTATAATGGATGCTCATCTGAGATATTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACGTATGCACAGCAATCTAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATATAGAACACAGGCAGAGCTGGAGAATACACGAGTTTCTAGCAGTTTTACAGAAACCGTGCCAGGTTCTGAAGGCACCCATGTTGTAGGTTTGAACTCGTACAGGAGTTTAGATTCAGGGATGCTGTCTGCAACCAAAGGGGAGCTTCAAACAGTTAAACAGGGTTATCTGTTAAAACGGTCATCAAGCTCGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCATGGGCTCTCAGTCATATAATTATGCTCGTTCTCATGAGCAAAATAGTGGAATGTTTGGTAGATTCCGTTCAAAACACAACAGGGCTGCATCACTGAATGAGGATAGTTTAGGTTGTTATACTGTTGATCTATGCACATCAACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACATTCACACTTCAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCACAGTTTCTTCAACAGCCTCACTATGGTAGAGTGAATTCACAGAATAAAAACTCAGGAATTGGTGCTTCTTTGTCAAGTCAATCAGAGGATGGTCATAAATCATCAATGGATAACTTATATTCCAAGGAAGTGGGTAGTGTCTCTAAGATTTTAAGGGGGATTCCAGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGCTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAAAATACCGTTTTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACTTGATCATGAAAGGGTTGGTGAATTACGTGTAGCTATTAAACCTTGCTCAACAGATGCCTTCCAAATCAAGGAGAAATACATCCAAGCAAAGTACGTAGAGAAATCACTAATAATCCGAGAAGAGGATATACCTGAGAATCCTTCAGTTTCCATAAGAATCTGGCAAGCAGTTCAGGCTGTAAATGTACGAGAAGTGTATCGCCTTGTTGTTACATCAACATCAAATATGATAAACACAAAATATGGTGACGAGGTTCACCATGCTGCTGACACTGAAGGGCATCAGCATGATCCCGAAGCTTGTCTGAAGGTTGAAGAGACTATTGAGACTGAGAGGTGTTTCCGTGGATGGTCATTATTACATTTGGCATGCCATACTGACAGTGTACTGATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACTTGTGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATAAATTGGCAAAGTTTCTACTGAGAAGGGGGGCAAGGCCATCAGTTAAAGATGTCGAAGGGCTCACTATACTTGAAAGAGCAATGGAGATGGGAGCAATAACCGATGAAGAGCTATTTATTATGCTTGCTGAATCCTAG 2325 0.4026 MASAFVKLDDSPMFQKQLFSLEETTDELKDRCQKLYNGCKKFMTALGEAYNGEMSFADSLEVFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLIDRLMEFMNIDLQDTKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAGLEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENTRVSSSFTETVPGSEGTHVVGLNSYRSLDSGMLSATKGELQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGNLYYYRVKGVKPMGSQSYNYARSHEQNSGMFGRFRSKHNRAASLNEDSLGCYTVDLCTSTIKMDAEDTDLRLCFRIISPSKTFTLQAENEADRMDWVNKITGAITSLFNSQFLQQPHYGRVNSQNKNSGIGASLSSQSEDGHKSSMDNLYSKEVGSVSKILRGIPGNDKCAECSAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTVLELFDNLGNAYCNSIWEGLLLLDHERVGELRVAIKPCSTDAFQIKEKYIQAKYVEKSLIIREEDIPENPSVSIRIWQAVQAVNVREVYRLVVTSTSNMINTKYGDEVHHAADTEGHQHDPEACLKVEETIETERCFRGWSLLHLACHTDSVLMVELLLQFGADVNLCDYHGRTPLHHCITSGKNKLAKFLLRRGARPSVKDVEGLTILERAMEMGAITDEELFIMLAES* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00873 774 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Lapu11g00873 774 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Lapu11g00873 774 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Lapu11g00873 774 SUPERFAMILY Ankyrin repeat 629 769 IPR036770 -
Lapu11g00873 774 Pfam PH domain 297 428 IPR001849 -
Lapu11g00873 774 ProSiteProfiles Ankyrin repeat profile. 715 747 IPR002110 GO:0005515
Lapu11g00873 774 ProSiteProfiles Ankyrin repeat region circular profile. 715 746 - -
Lapu11g00873 774 Pfam Ankyrin repeats (3 copies) 678 746 IPR002110 GO:0005515
Lapu11g00873 774 ProSiteProfiles Ankyrin repeat region circular profile. 682 713 - -
Lapu11g00873 774 SMART arf_gap_3 479 611 IPR001164 GO:0005096
Lapu11g00873 774 Gene3D Arf GTPase activating protein 460 611 IPR038508 -
Lapu11g00873 774 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Lapu11g00873 774 CDD ArfGap 483 598 - -
Lapu11g00873 774 Coils Coil 229 249 - -
Lapu11g00873 774 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Lapu11g00873 774 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Lapu11g00873 774 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 611 IPR001164 GO:0005096
Lapu11g00873 774 CDD PH_ACAP 298 433 - -
Lapu11g00873 774 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Lapu11g00873 774 PANTHER CENTAURIN/ARF 3 773 IPR045258 GO:0005096
Lapu11g00873 774 SMART PH_update 296 431 IPR001849 -
Lapu11g00873 774 SUPERFAMILY ArfGap/RecO-like zinc finger 481 604 IPR037278 -
Lapu11g00873 774 Gene3D - 289 442 IPR011993 -
Lapu11g00873 774 CDD BAR_SFC_plant 16 217 IPR035670 -
Lapu11g00873 774 ProSiteProfiles Ankyrin repeat profile. 682 714 IPR002110 GO:0005515
Lapu11g00873 774 Gene3D - 615 772 IPR036770 -
Lapu11g00873 774 SMART ANK_2a 682 711 IPR002110 GO:0005515
Lapu11g00873 774 SMART ANK_2a 715 744 IPR002110 GO:0005515
Lapu11g00873 774 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Lapu11g00873 774 Pfam Putative GTPase activating protein for Arf 483 603 IPR001164 GO:0005096
Lapu11g00873 774 SUPERFAMILY PH domain-like 296 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00873 Lapu-Chr11 11356549 11369326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00873 489 600 C2H2 Transcription Factor Family AT3G07940 39.655 2.81e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00873 K12489 - gmx:100796740 1397.88