Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00856 ATGCGTAGAACGATCGCGTTTCTCGTTCACCCACGACTCCTTCTTGTCTTCCTTCTTCTCTCAATTTTCCTTGTTTTCACACATACTGGTTCTACTACTACTACTACTACTTATGGTTCTACTATTCCAAAACTGGTTGTTGAGGAGAAAATAGAACAGGATCCTGAAATTACACACAGAGTATTCTTGGACATCGATATTGATAAACAGCGTTTAGGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGTACAGGGCGGAAAGAAAAGAGTGAAAATGGCTTAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAGTATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCATGAGGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCGGACGAGAATTTCAAGATTAAACATTCTCATGCTGGCGTTGTCTCTATGGCAAATTCAGGACCTGACTCCAATGGCTCACAGTTTTTCATTACCACGGTGAAGGCCAGTTGGTTGGATGGAGAGCATGTTGTATTTGGCAAGGTTGTTCAAGGCATGGATATTGTGTATGTAATTGAAGGGGGAGCCGGAACCTACAGTGGAAAGCCCAGAAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCCAAGAGCCACTGGGACGACGAAACTTGA 711 0.4219 MRRTIAFLVHPRLLLVFLLLSIFLVFTHTGSTTTTTTYGSTIPKLVVEEKIEQDPEITHRVFLDIDIDKQRLGRIVIGLYGKVVPKTVENFRALCTGRKEKSENGLKLHYKGTPFHRIVSGFVIQGGDIVHHEGKGSESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDIVYVIEGGAGTYSGKPRKKVVIADSGEIPKSHWDDET* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00856 236 Gene3D - 47 233 IPR029000 -
Lapu11g00856 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Lapu11g00856 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 94 IPR002130 GO:0000413|GO:0003755
Lapu11g00856 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Lapu11g00856 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 158 173 IPR002130 GO:0000413|GO:0003755
Lapu11g00856 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Lapu11g00856 236 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 60 227 - -
Lapu11g00856 236 FunFam Peptidyl-prolyl cis-trans isomerase 47 233 - -
Lapu11g00856 236 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 110 127 IPR020892 GO:0003755|GO:0006457
Lapu11g00856 236 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 65 224 IPR002130 GO:0000413|GO:0003755
Lapu11g00856 236 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 226 IPR002130 GO:0000413|GO:0003755
Lapu11g00856 236 SUPERFAMILY Cyclophilin-like 55 227 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00856 Lapu-Chr11 11214821 11218894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00856 73 224 U-box Gene Family AT5G67530 42.484 4.50e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00856 - - gmx:100800775 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00856 11 11214821 11218894 Lapu11g00856 11 11214821 11218894 ECH