Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00850 ATGGGAAGATCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGACTTATATCTTACATTCGAGCTCACGGGGAGGGCTGCTGGCGCTCCCTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGTCCCGACCTCAAGCGTGGCAACTTCACCGAAGAAGAGGATGAACTCATCATCAAACTCCACAGCCTCCTCGGTAACAAGTGGTCTTTGATAGCTGGGAGATTGCCTGGGAGAACGGACAATGAAATAAAGAACTATTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCATAGACCTCTAAACGAAGCTGCTTCTTCTGCAACAGTTGCGACAGTTGCAACTGCCAGCAATATATCTTTTGGTAAACAAGAACAAGAGACAAGTTCGAGTAACGGAAGCGTTGTTAAGGGCTCCATCTTAGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCAACAACAACAACAACAACAACAATCTCTCAAGAATCTTTGCTTCGTTTGCAGTTTGGGTTTGCACAACAGCAAGGATTGCAGCTGCAACGTTGCCAACTCTGTCACTGCCAACAACACGGCTCCTCCTGCTTCTGCTTCTGCTTATGATTTCTTGGGCTTGAAAAGCAACGGTGTTTGGGATTGCACCAGCTTGGAAATGAAATGA 762 0.4882 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASSATVATVATASNISFGKQEQETSSSNGSVVKGSILERCPDLNLELTISPPRQQQQQQQQSLKNLCFVCSLGLHNSKDCSCNVANSVTANNTAPPASASAYDFLGLKSNGVWDCTSLEMK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00850 253 CDD SANT 69 112 IPR001005 -
Lapu11g00850 253 CDD SANT 16 61 IPR001005 -
Lapu11g00850 253 SMART sant 66 114 IPR001005 -
Lapu11g00850 253 SMART sant 13 63 IPR001005 -
Lapu11g00850 253 FunFam Myb transcription factor 68 137 - -
Lapu11g00850 253 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lapu11g00850 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu11g00850 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu11g00850 253 Gene3D - 68 137 - -
Lapu11g00850 253 Gene3D - 14 66 - -
Lapu11g00850 253 FunFam MYB-related transcription factor 13 66 - -
Lapu11g00850 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu11g00850 253 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu11g00850 253 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 203 - -
Lapu11g00850 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu11g00850 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00850 Lapu-Chr11 11161925 11163461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00850 1 253 MYB Transcription Factor Family AT4G34990 58.759 5.30e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g00850 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00850 K09422 - gmx:780553 444.506