Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00810 ATGCGAACCCTCTGCGACGTTTGCGAGAGCGCCGCCGCCATTCTCTTTTGCGCCGCCGATGAGGCTGCTCTCTGCTCTGCTTGTGACCACAAGATCCATATGTGTAACAAACTTGCTAGTAGACACATTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCATGAAAGATATCTTCTATTGAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCACTGGATCAAAATGAATTCAGGAGGGACGAAAGTCAGTCTCTCAAGCTAAAAACAAGAGCTAGTCCGCAGAATCACAGTATCTTACCTGTTCCAATACAAGAAAATAATATTGATGGTCATGGAAAAATGGATAAAAAGTTAATTGATCTCAACACCAGGCCATTGCGGTTAAATGGACCAACACCAAACAACCAGGAACAAGTTATGGATATTTTAAGAGGCAATAATCATGAATTTGCGAGTGTGCCACCAGTTGAATCCTACAAACAAGGGGCTGAGAAGTAA 639 0.4382 MRTLCDVCESAAAILFCAADEAALCSACDHKIHMCNKLASRHIRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKPAQMEELGLQPLDQNEFRRDESQSLKLKTRASPQNHSILPVPIQENNIDGHGKMDKKLIDLNTRPLRLNGPTPNNQEQVMDILRGNNHEFASVPPVESYKQGAEK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00810 212 Gene3D Classic Zinc Finger 2 95 - -
Lapu11g00810 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lapu11g00810 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lapu11g00810 212 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Lapu11g00810 212 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Lapu11g00810 212 CDD Bbox1_BBX-like 56 96 - -
Lapu11g00810 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu11g00810 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 143 - -
Lapu11g00810 212 CDD Bbox1_BBX-like 4 47 - -
Lapu11g00810 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lapu11g00810 212 FunFam B-box zinc finger protein 19 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00810 Lapu-Chr11 10896967 10900101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00810 1 196 C2C2-CO-like Transcription Factor Family AT2G21320 58.673 4.44e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lapu11g00810 zf-B_box 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00810 - - gmx:100527369 401.364