Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00804 ATGGAAGTTGTGGCTGCCAAAGCGCTCAAACCGAGCTTGCGAACAGAGTTCATTTTCCCGCAAGCAATTTGCGACGAGATTTTGTGTTTCAACGCGAACAACATTGTAGTCGGCGAAGATTTTTCCGTCGACGACCTTCTTGACTTCTCCAACGGCGAATTCCAACTTGATAAGGATTTTAATGTCTACGAGGAAGAGGAAGACGAGGAAAAACGCAGCACCTCCGGTTCCTCGCAGGACAGCAATTCCAATTCCACCGCCGCAGGCAGCGCCGCCGACTCTGACTCCGTCTTCGCCGGGGAATTATCAGTTCCCGCGGATGATGTGGCGGACTTGGAGTGGGTTTCTCACTTCGTAGATGATTCTCTTCCAGAGCTATCTCTATTATACCCTGTCTCTTCCGACCAAACAAGGATATGGGCCAAACCAGAACCTAGACCGGGTCAGGCCCAAACCATTTCAGCGATTCCCAGAAGGCCGAGAACCGGAAAGAGTAGAAAGTCCAACGCTCGTGTGTGGTCTTTTACCGTGTCGTCGCCGCGGAGTTCGTGTGTTTCAACTGGCTCCCTTGAGTTTGCCGAGCCGGCGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAAGTGGGGTCCAGTTTCAGCGACGGTGCAGCCACTGCCATGTGCAGAAAACGCCGCAGTGGAGAACCGGTCCACTGGGGCCCAAAACACTCTGCAACGCTTGTGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCTGTAGCCCGACTTTCTCCGGCGATATTCACTCAAATAGCCATCGTAAGGTGTTGGAGATGAGGCGGAGAAAAGAGGTGACTGAACCGGAAACCGGTTCAGACCGAACTCAGCTGGTCCCAAGCTGTTGA 900 0.5333 MEVVAAKALKPSLRTEFIFPQAICDEILCFNANNIVVGEDFSVDDLLDFSNGEFQLDKDFNVYEEEEDEEKRSTSGSSQDSNSNSTAAGSAADSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVSSDQTRIWAKPEPRPGQAQTISAIPRRPRTGKSRKSNARVWSFTVSSPRSSCVSTGSLEFAEPAAKKQKKKAEAQSGVQFQRRCSHCHVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEVTEPETGSDRTQLVPSC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00804 299 PANTHER GATA TRANSCRIPTION FACTOR 32 288 - -
Lapu11g00804 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 271 - -
Lapu11g00804 299 FunFam GATA transcription factor 204 292 - -
Lapu11g00804 299 MobiDBLite consensus disorder prediction 63 92 - -
Lapu11g00804 299 PIRSF Txn_fac_GATA_plant 1 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu11g00804 299 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Lapu11g00804 299 Gene3D - 211 291 IPR013088 GO:0006355|GO:0008270
Lapu11g00804 299 MobiDBLite consensus disorder prediction 279 299 - -
Lapu11g00804 299 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Lapu11g00804 299 MobiDBLite consensus disorder prediction 76 92 - -
Lapu11g00804 299 SMART GATA_3 210 264 IPR000679 GO:0006355|GO:0043565
Lapu11g00804 299 CDD ZnF_GATA 215 272 IPR000679 GO:0006355|GO:0043565
Lapu11g00804 299 ProSiteProfiles GATA-type zinc finger domain profile. 214 246 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00804 Lapu-Chr11 10864626 10866739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00804 40 286 C2C2-Gata Transcription Factor Family AT4G36240 45.525 9.90e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu11g00804 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00804 - - gmx:100776188 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00804 11 10864626 10866739 Lapu11g00804 11 10864626 10866739 ECH
Lapu9g02434 9 38782519 38784765 Lapu11g00804 11 10864626 10866739 ECH