Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00794 ATGAAGATCCAGTGTGATGTGTGTCACAAAGAAGTGGCCTCCTTGTTCTGCCCCTCAGATGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCTGACAAACACAAACGATTCTCTCTCCACCACCCCACCTCCAAAGGCACCCCTCTCTGTGATATCTGTCATGAGAAGTGTGCTTATGTGTTTTGCAGAGAGGACAGAGCAGTGCTTTGCAGAGAATGCGACGTTTCTATTCATGGGAACAACGAACATACCAAGAAACACGATAGGTTTCTTCTCACCGGAATAAAACTTGGTGCTGCCATTGAAGAAAGAACAAGAACAACTTCTCGTGCTGCAACCTCTCGTTCTAAAATAAACGCACAAAGTTCACTCTCAAATGAAAACATTGGTTCTTCCCGCACAGTAGGATTATCTTGTGACTCGGGTTCGGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGAGACCATTCCTGGTTACTGCATGGAAGACCTTTTAGATGCTTCATTTGCTGCATCAAATGCTTTCTCTAAGTTTGAAGGGTTGTTTCAGGATTATGAGCACCAATCAGCGTTTCAGAATCAAGATATGTGCTCGTTCCCACTGCAATCTCAATTTAGCAGTACTTCCAATCTTTATCCTCAGATTGAATCTCTGGTTGGAGTCATGGAAATGCCGAAAGCCAAAGCTGGTGAAGGATACTCCAATTGGATTCATAATTCTCACTACGCAGCCTACAAAGTTCCCTCAATTTCTCCTCCTTTAGTCAAACAAAATAAACGCTCTCGTTAA 816 0.4387 MKIQCDVCHKEVASLFCPSDEAALCHACDRTIHHANKLADKHKRFSLHHPTSKGTPLCDICHEKCAYVFCREDRAVLCRECDVSIHGNNEHTKKHDRFLLTGIKLGAAIEERTRTTSRAATSRSKINAQSSLSNENIGSSRTVGLSCDSGSVSTSSISEYLIETIPGYCMEDLLDASFAASNAFSKFEGLFQDYEHQSAFQNQDMCSFPLQSQFSSTSNLYPQIESLVGVMEMPKAKAGEGYSNWIHNSHYAAYKVPSISPPLVKQNKRSR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00794 271 MobiDBLite consensus disorder prediction 119 141 - -
Lapu11g00794 271 CDD Bbox1_BBX-like 5 47 - -
Lapu11g00794 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lapu11g00794 271 CDD Bbox1_BBX-like 57 100 - -
Lapu11g00794 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu11g00794 271 Coils Coil 267 271 - -
Lapu11g00794 271 MobiDBLite consensus disorder prediction 114 141 - -
Lapu11g00794 271 Gene3D Classic Zinc Finger 1 98 - -
Lapu11g00794 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 261 - -
Lapu11g00794 271 FunFam B-box zinc finger protein 21 1 98 - -
Lapu11g00794 271 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lapu11g00794 271 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Lapu11g00794 271 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lapu11g00794 271 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00794 Lapu-Chr11 10767306 10769107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00794 1 271 C2C2-CO-like Transcription Factor Family AT1G75540 36.716 1.11e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lapu11g00794 zf-B_box 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00794 - - pvu:PHAVU_011G040800g 400.979