Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00758 ATGTTGCATTGTCTCAACGGCTCGGGGAATCTAGGAGCGTCTTGTTCCGACATGACAGTGTTGGATAGACAAAGGGAAGCAACCATGAAGTGGAACGACAATCACCAACCTTACTTTTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCTTCTTCTTCCAACAATCTTCCTCAGAGTCAGGGCTTGGTCATGGCGCGTGATGATTCCGCGCTTGGTCAGGTGTTGCCTCATTCTCTGAAACCCGACCCGGGTCTCTGCCAAGAATTGGACACCGGATTCGGATCTTCTTCCGGTTTTTTACCCAAGGAAAAGAATAAGAAGAGGAAGGCGCAGAACTCCAAGGTTGCAGCGGAGAGTGATGTCAAGGACAAGAGAGTCAAAGTGAGTGGTGAGGAAGGAGAATCCAGAGTAACGAACCAAACCAGCAACAAAAATGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCAAAGGATAATTCGAAAGGCTCCGAGGTTCAGAACCAGAAGTCTGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGCCATAGCCTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCCGGTTGCAACAAGATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCAGCTGTAAATCCAAGGCTTGACTTCAACATTGACGAACTGTTTGCCAAAGAGGTGTTTCCTTCGTGTGCTCAAGGTCTACCCAACATTGGGATGCCATCAGATATGAGTATGTGTAACAACCCCTCGTATCTTCAGTTCAACTCATCACAGCAACTTGTATCCTGTTGTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCGAATATGGGACTACGAAGGAACATTAGTACTACACCTGTACCTTTGCCCGAAGCCTTTCTTGATTCGTCCTGTTTCACTCAAATTCTACCCTCTTCAAATTGGGAAGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAGCAGCATCGTTTCCTTCTCAGCCATTTACAGAAAGTTGTGGTAAAGGTCTTTGCAGCTTGCTCAATAACATTAGAAAGATCAATGCTGATTGCCATATATAA 1215 0.4477 MLHCLNGSGNLGASCSDMTVLDRQREATMKWNDNHQPYFSATEFHVNLVFSSSSSSSNNLPQSQGLVMARDDSALGQVLPHSLKPDPGLCQELDTGFGSSSGFLPKEKNKKRKAQNSKVAAESDVKDKRVKVSGEEGESRVTNQTSNKNGKSNANKNNRETSADSSKDNSKGSEVQNQKSEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFPSCAQGLPNIGMPSDMSMCNNPSYLQFNSSQQLVSCCGGLINNVGISPPNMGLRRNISTTPVPLPEAFLDSSCFTQILPSSNWEGDFQSLYNVAFDQGRAASFPSQPFTESCGKGLCSLLNNIRKINADCHI* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00758 404 FunFam Basic helix-loop-helix transcription factor 188 260 - -
Lapu11g00758 404 MobiDBLite consensus disorder prediction 105 136 - -
Lapu11g00758 404 MobiDBLite consensus disorder prediction 137 160 - -
Lapu11g00758 404 Pfam Helix-loop-helix DNA-binding domain 195 242 IPR011598 GO:0046983
Lapu11g00758 404 Gene3D - 188 262 IPR036638 GO:0046983
Lapu11g00758 404 MobiDBLite consensus disorder prediction 181 200 - -
Lapu11g00758 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 241 IPR011598 GO:0046983
Lapu11g00758 404 MobiDBLite consensus disorder prediction 100 200 - -
Lapu11g00758 404 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 94 294 IPR024097 GO:0006355
Lapu11g00758 404 SMART finulus 197 247 IPR011598 GO:0046983
Lapu11g00758 404 CDD bHLH_AtBPE_like 181 266 - -
Lapu11g00758 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 260 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00758 Lapu-Chr11 10513070 10516133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00758 5 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.753 2.01e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g00758 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00758 - - vun:114168601 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00758 11 10513070 10516133 Lapu11g00758 11 10513070 10516133 ECH
Lapu11g00758 11 10513070 10516133 Lapu2g00658 2 5772930 5774418 ECH