Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00724 ATGGAGGATTACGCAAGCAGCGACGAGGATTACCCTTACGACTCCGATCAGGATGACTCCGTCGAGGCCTACGATAACGAAGAGGATTACGCGTTGCTCTCTTCCAAGGGTCCCACTACTAAGGTGATTACAAAGGAATCACTTTTGGTTGCACAGAAGGAGGATTTGCGCAGAGTGATGGAGATGCTTTCGGTAAGAGAGCAACATGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGGAAAGCATTTCTCTTTGGTGAGGCTGGTGTTAGTGTGGATGAACATCGCGACTCTGACTCATCCGTTCCATCTACAGTAATGTGCTACATCTGCATGGAGGACGTTGCTAGGGTCGAAACAACTAGAATGGACTGTGGTCATTGCTTTTGCAACTCCTGTTGGATTGAGCATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTCGTTAGAACTCTACTCAGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCCAAGAAGTGTCGAGACGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGCCCTAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCACAGCTGTGGTCGCTACAAAGAGCAAGAGAAAACAGCAGAACGAGCTAAGAGGGACCTATATAGGTATATGCACTATCATAATCGATATAAAGCTCACACGGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCAAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGAGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCGAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTCGTGGAGATAAGAATGCAGATTCTCAACCTCTCAACAATTATTGATAAGCTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCAGTTTGCTGGAACAACAAAGTCAATACTGAAATGTTACTGAGTGAAAAGGATTATTGTATATATGCTGCAAGCGTAGGTGTAACAGCAGAACTTGATCGGCCTTCTGGATCAGGGAGTTCAGATGATAACGGATGCTCGTCTCGTAAACGTGCTAGAAAAGATGGTCTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1785 0.4168 MEDYASSDEDYPYDSDQDDSVEAYDNEEDYALLSSKGPTTKVITKESLLVAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVSVDEHRDSDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTEMLLSEKDYCIYAASVGVTAELDRPSGSGSSDDNGCSSRKRARKDGLGGGFFDLNLPAEFVDRN* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00724 594 SUPERFAMILY RING/U-box 191 259 - -
Lapu11g00724 594 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
Lapu11g00724 594 MobiDBLite consensus disorder prediction 1 20 - -
Lapu11g00724 594 SUPERFAMILY RING/U-box 116 203 - -
Lapu11g00724 594 SMART ibrneu5 261 326 IPR002867 GO:0008270
Lapu11g00724 594 SMART ibrneu5 191 253 IPR002867 GO:0008270
Lapu11g00724 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 206 IPR013083 -
Lapu11g00724 594 Gene3D - 249 496 - -
Lapu11g00724 594 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Lapu11g00724 594 SUPERFAMILY RING/U-box 261 318 - -
Lapu11g00724 594 Pfam Ariadne domain 330 594 IPR045840 -
Lapu11g00724 594 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270
Lapu11g00724 594 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 397 IPR031127 GO:0004842|GO:0016567
Lapu11g00724 594 CDD Rcat_RBR_ARI1-like 274 327 - -
Lapu11g00724 594 FunFam RBR-type E3 ubiquitin transferase 249 496 - -
Lapu11g00724 594 CDD RING-HC_RBR_TRIAD1 118 171 - -
Lapu11g00724 594 CDD BRcat_RBR_ANKIB1 198 262 - -
Lapu11g00724 594 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00724 Lapu-Chr11 10228277 10232239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00724 60 527 ARIADNE family AT2G16090 72.881 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00724 K11968 - gmx:100783343 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00724 11 10228277 10232239 Lapu11g00724 11 10228277 10232239 ECH