Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00714 ATGCCTCCTTCTCAGTCACCCCATTGGGCCCCATCTCCATCTCCAACCCCAACCCCAACCCCAATACTCAACAAATCATTCTTACCGCCGCCGTCAAACTCGCCGGGGGTTGACTTCAGCCCCCCCTTGATTGCAATGGTCGTAGTCGTCGCCACCGCCTTTCTCGTCGTAACCTACTCCCGCCTCATCGCGCGCCACCTCAGGCCGCCAATCCTCCGCCTCCTCCACCGCTTCCGGCGGAGGCGATTCCCCCCGTCTTCCGTGGGCGACCTCGAGTCCCTACCCTACGAGTCTCCCTTTGACGGCTCACGCGTGTTCTCTCCCTACGGTTTAGACGAAACGGTGATTAAAACGATACCGTTTTCGCTTTACACGGCGAAATACGACGCACGTTTCGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGGTGGAATTCGAAGACGAAGACTACGTGAGAACGCTCCCCGTTTGTTCACACACGTTCCACGTGGACTGCATCGATGCGTGGCTTCGCTCGCACGCTAACTGCCCCCTCTGCCGCGCCGGAGTCCTCTGCGCTGATTCGCCTTTCACTCCGATGATGGCGGCCAGAATCCGACCAAGCCTCGACGACGACACAATTCTCCACCGCATCAGCTTAGACCCTCTCCTCGATCCGCCACCGCCTGTGGCAATATCCGCCGTGCCAGAGATAACACCCTGCATCGACGAGCAATCTCCGAGGAGGAACCAGAACCACGCGGACGTTAACTCGGAGGACTGTTTTCGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGGTTTGAACGGAGTGTCGCGTCGGAGAGGATGGTGATGGAAGCCGCCACTGCTTCGCCGTGGCGGTACCGAAGAGGGAGCAATAGTTTCTGGAGCAAGAGACCTTCGCCGTTTGGGTCTTTGGGGAAACCAAGGGTGTTTTCATTTCGGTATTACAGAGGGATGAAATCACCGTTCTTCCGGCGGAGAGGTTTTTTTCCGTTGTCGGAGTCAAGCGTGAGATACGGGGGCGGCGGGAGCTCGTCGCGGCGGAGCAAGTCGATTGCGAGCCCAATGTTTCTGCGGTCGTCGGGGCTGGCGGCGGCGGCGTTCTCGTCTAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTATCGCCTGAGAGATTCAACCGGAGGTGA 1182 0.588 MPPSQSPHWAPSPSPTPTPTPILNKSFLPPPSNSPGVDFSPPLIAMVVVVATAFLVVTYSRLIARHLRPPILRLLHRFRRRRFPPSSVGDLESLPYESPFDGSRVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLVEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRISLDPLLDPPPPVAISAVPEITPCIDEQSPRRNQNHADVNSEDCFRDFLLKRSYSFGFERSVASERMVMEAATASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00714 393 CDD RING-H2_EL5-like 138 181 - -
Lapu11g00714 393 FunFam RING-H2 finger protein ATL65 104 185 - -
Lapu11g00714 393 PANTHER RING-H2 FINGER PROTEIN ATL16 27 205 IPR044600 GO:0016567|GO:0016740
Lapu11g00714 393 Pfam Ring finger domain 137 181 IPR001841 -
Lapu11g00714 393 MobiDBLite consensus disorder prediction 1 27 - -
Lapu11g00714 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 185 IPR013083 -
Lapu11g00714 393 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Lapu11g00714 393 SMART ring_2 139 180 IPR001841 -
Lapu11g00714 393 SUPERFAMILY RING/U-box 123 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00714 Lapu-Chr11 10179407 10180835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00714 32 393 C3H Transcription Factor Family AT3G18930 50.877 6.77e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00714 - K19041 gmx:100806115 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00714 11 10179407 10180835 Lapu11g00714 11 10179407 10180835 ECH