Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00703 ATGACTGGTGCCGAGAAGTACCCAGACTTCTTCAAAGTCTTCCTTCAAGATCAACACTACGAAAGAATGCTTATTCCAAATGCTTTTGTGAAGTTGCAAGGGTTACAGGAAAGGATCCCTGAGGTTGTCCTCCTCAGGAATCGTAGTGAGAGAGTGTGGCATGTTAAAACACGTTTTTTTGGAGACAGGTTATATTTCGATGATGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAGGAAATGCAGATTTTCTTGTATTTAGATATGACGGGGTTAATGAGTTCAGGGTCACAATCCTTGAAACATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAGGAGAATGGAAAAGAGAAAGCAGCAAGACAAAAAGTTGAAGAGACAGTGATAACACAAGAGGAACAAGCTGAGGACTGTGACATAGAGGATGAGGAAGACAGCCAAGATCAGGACTATGATGACGACAATGACGATAGTGATTTTGATGATGAGGAGAACACAGAGATGGAAGAAGAGAGTGAAGAAGAAAACAGTGTTGGTCCTGTTGGATACACGAGTCAAAGTTATCGCAAAGCTTGCAGAAGGGACACCGCATCAAGTTCCTACACCCAGACGGAAGACCCTTTTAAAGACGATGAATTTGACCCAGATATGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAATGAATTGCATATTCCAGGAATCGCCATTCAAGATTTCTCTCTTAGTTTTCCTGAAAAGATTACCCTTAAATGTTGCCAACACTGCCAGCGTAAGGATATTCAAAGAAACAAATTGCAAAACTATCATCCCAACTTGGCCCAACAGGCACCCATCCGGAAAAGATATTTAGAAGTGACAGGAAAAGTGTGCAGGTGGCAAGATGATCGAATATGTATAAAGGGTTGGGCAAACTTTAGTAGAAGGAACAAGATCAGAAATAATGATGTATGCATCTGTGAAGTTATATCAGGGGATGACCAAGTAGTAAGAACATTTCTGGTGCACGTTATTGGCGTTAGGAGGGAATAA 1071 0.4118 MTGAEKYPDFFKVFLQDQHYERMLIPNAFVKLQGLQERIPEVVLLRNRSERVWHVKTRFFGDRLYFDDGWKIFHEENCLGNADFLVFRYDGVNEFRVTILETSTQCEKTLVKMEEEEENGKEKAARQKVEETVITQEEQAEDCDIEDEEDSQDQDYDDDNDDSDFDDEENTEMEEESEEENSVGPVGYTSQSYRKACRRDTASSSYTQTEDPFKDDEFDPDMCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNKLQNYHPNLAQQAPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIRNNDVCICEVISGDDQVVRTFLVHVIGVRRE* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00703 356 MobiDBLite consensus disorder prediction 112 135 - -
Lapu11g00703 356 Pfam B3 DNA binding domain 10 100 IPR003340 GO:0003677
Lapu11g00703 356 MobiDBLite consensus disorder prediction 112 219 - -
Lapu11g00703 356 SMART B3_2 10 103 IPR003340 GO:0003677
Lapu11g00703 356 Gene3D - 217 354 IPR015300 -
Lapu11g00703 356 MobiDBLite consensus disorder prediction 136 181 - -
Lapu11g00703 356 CDD B3_DNA 8 100 IPR003340 GO:0003677
Lapu11g00703 356 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Lapu11g00703 356 SUPERFAMILY DNA-binding pseudobarrel domain 300 352 IPR015300 -
Lapu11g00703 356 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
Lapu11g00703 356 Coils Coil 110 132 - -
Lapu11g00703 356 Gene3D - 2 106 IPR015300 -
Lapu11g00703 356 PANTHER B3 DOMAIN-CONTAINING 5 339 - -
Lapu11g00703 356 MobiDBLite consensus disorder prediction 183 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00703 Lapu-Chr11 10096981 10098901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00703 1 350 B3 DNA Binding Superfamily AT3G06160 22.905 1.75e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu11g00703 B3 4.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00703 - - var:108340234 549.28