Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00702 ATGACGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTCTCCAACCCAACCAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGAGGTGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGCAAAAGGCAGACAACAAGTATTGGTTCCTTGACGGTTGGCAAGACTTTATTCAGCACTATTCCATTGGCGTTGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCGGCCATGCGATGCAATAATGAAGGGCCTCACTTTGCAAATCTTCTTAAATTTTTTGAAGAAATGGATGATGAAGATTCAATTGAAATCTTGGATTCATCACCTTCCCATATTGCTCCCAGTTCATTGCAAAATAAAGTTCTTGCTGGAGCAGTAGATAAAATGCCACCCGGAAAGAGTTATACTCCTCCAGCATTGCAAAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTGATGCCCATTGTTCGAAAAGTGCCAATTCACTAGATAATCGATTTACGAGAGACATAGGAGTTCAATTTAATGCAGTCGAGTTCAAAAGATCTACAGAAGAATTGAAATTACGTGCTTCCATGGAGGAAAGGATGAAAAAAAGTGCAAGAAAGAAGCGGAAATCAGATGGACAGGAGCCCTCTGCTGAACAAGAAGAGGAAGTTGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGTCATCAATGCAGCGAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCCTCCTACCTATACAGGGGATGCATAATGTATCTGCCATCCTGTTTTGCAGAAAAACATTTGAATGGAGTTTCTGGGTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGGAGGTAGAGCTAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGACGTGTGTGTGTTTGAGCTTCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCGCATTACTGAGAATGTGGGATTGTTGAGCCCTTCTCCATTGCAGCAGAATCAAAACATGAGCTCAGCTAAACTGCTGAACACTCCCTTGCAGCAACAACTTACTTCAACTAAAATGGTTAGAAATTAG 1293 0.4138 MTHPSFHKLLLPSTLQPNQLRLPDDFMRKYGGELSPIVTLSVPDGSVWRVGLQKADNKYWFLDGWQDFIQHYSIGVGYLLVFRYEGKSSFNVHVFNLATSEINYQSAMRCNNEGPHFANLLKFFEEMDDEDSIEILDSSPSHIAPSSLQNKVLAGAVDKMPPGKSYTPPALQNLFNGSKLNSINWGEGGDAHCSKSANSLDNRFTRDIGVQFNAVEFKRSTEELKLRASMEERMKKSARKKRKSDGQEPSAEQEEEVEMRFRFYESASARKRTVTAEERERVINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFRITENVGLLSPSPLQQNQNMSSAKLLNTPLQQQLTSTKMVRN* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00702 430 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Lapu11g00702 430 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Lapu11g00702 430 Gene3D - 273 393 IPR015300 -
Lapu11g00702 430 SMART B3_2 6 98 IPR003340 GO:0003677
Lapu11g00702 430 SMART B3_2 296 391 IPR003340 GO:0003677
Lapu11g00702 430 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Lapu11g00702 430 CDD B3_DNA 294 389 IPR003340 GO:0003677
Lapu11g00702 430 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Lapu11g00702 430 MobiDBLite consensus disorder prediction 228 256 - -
Lapu11g00702 430 CDD B3_DNA 4 96 IPR003340 GO:0003677
Lapu11g00702 430 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
Lapu11g00702 430 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lapu11g00702 430 MobiDBLite consensus disorder prediction 241 256 - -
Lapu11g00702 430 Gene3D - 1 98 IPR015300 -
Lapu11g00702 430 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00702 Lapu-Chr11 10089448 10093571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00702 1 392 B3 DNA Binding Superfamily AT3G18990 51.523 1.23e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu11g00702 B3 7.6e-16 CL0405