Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00701 ATGACTAGTGGTGCCAAGAAATACCCTCACTTCTTCAAAATCTTCCTTCCAGAGCAACATTCTTCCATAATGAAAGTTCCAAACGAGTTTTTGAAGCATTTGAATGAAGACTTGTCCAGTAATGCAGTTCTTAGTGGCCCTTCTTCTGAGGACCAGTGGCAAGTAACAGTTCTGAAGAAAGGAAATGACATGTATATGCAAAATGGTTGGCCACAATTTGTGACAGACAACTCAGTGATGCTTCATGAGTTCTTGCTTTTTACATATCATGGAGAAAACTGCTTCCATGTACAAATTTTTGGTAAGGATGGATTGGAGAGGTTATGCCTCAAAGAAACAAGACAAGAACAAGCTACCATCCCAAAGAAGTGTACACAAACTTTTGCCGGTTCATTCCTCCATAAATCCAAGTCTTGTAAAAAAGATATGCCTTTCAGAAACAAAGGCTCACTTTCTACTGGATGTGAGACAGAGAAAAGAAGACAAGAACAAACTGCCACCCCAAGTTTGGCAAGGACAAAGAAGAATAAAGAAAGAAATTTTTTTCCTGGTCCATCACACCTCCATGAATCGAAGTCTTATCAAGAAGATTTGTTCTTAAGCAACAAAGCCTCTCTTTTGAAGGACTTCCCAACACCTAAGCATTCAATTGAAAGTTCAGAAGCATGGAAATTGGCCGAGTCTTTTATTACCTCTTGCAATCCTCATTGGAAGCACCTCATGACAAAATCTAATGTGGAAGATCGTTGCGTATTGCCTATTGCTACTGAGTTTGCTAGAAAGTATATTCCTGAAGCAGTCAAACAGATCCAAATTGTAAATTCCGAAGGAACATTTTGGAAAGTGCAAGTGAGTTGTTTCAAAAATCAAAATAGAAGATATGCTCAGTTAACCACAGGATGGGAAAGTTTCGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAGACTTCCATTTGAGGGTTCACATATTCAGAACCAGATTTGCACCAAATTAA 1017 0.3864 MTSGAKKYPHFFKIFLPEQHSSIMKVPNEFLKHLNEDLSSNAVLSGPSSEDQWQVTVLKKGNDMYMQNGWPQFVTDNSVMLHEFLLFTYHGENCFHVQIFGKDGLERLCLKETRQEQATIPKKCTQTFAGSFLHKSKSCKKDMPFRNKGSLSTGCETEKRRQEQTATPSLARTKKNKERNFFPGPSHLHESKSYQEDLFLSNKASLLKDFPTPKHSIESSEAWKLAESFITSCNPHWKHLMTKSNVEDRCVLPIATEFARKYIPEAVKQIQIVNSEGTFWKVQVSCFKNQNRRYAQLTTGWESFVRDNKLMRGDTCIFELEEDFHLRVHIFRTRFAPN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00701 338 SUPERFAMILY DNA-binding pseudobarrel domain 233 334 IPR015300 -
Lapu11g00701 338 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Lapu11g00701 338 CDD B3_DNA 9 100 IPR003340 GO:0003677
Lapu11g00701 338 Gene3D - 216 334 IPR015300 -
Lapu11g00701 338 Gene3D - 3 104 IPR015300 -
Lapu11g00701 338 ProSiteProfiles B3 DNA-binding domain profile. 237 334 IPR003340 GO:0003677
Lapu11g00701 338 MobiDBLite consensus disorder prediction 172 188 - -
Lapu11g00701 338 Pfam B3 DNA binding domain 11 102 IPR003340 GO:0003677
Lapu11g00701 338 Pfam B3 DNA binding domain 240 333 IPR003340 GO:0003677
Lapu11g00701 338 PANTHER B3 DOMAIN-CONTAINING 6 322 - -
Lapu11g00701 338 SMART B3_2 237 334 IPR003340 GO:0003677
Lapu11g00701 338 SMART B3_2 11 103 IPR003340 GO:0003677
Lapu11g00701 338 MobiDBLite consensus disorder prediction 150 188 - -
Lapu11g00701 338 CDD B3_DNA 241 332 IPR003340 GO:0003677
Lapu11g00701 338 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00701 Lapu-Chr11 10079922 10084893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00701 9 333 B3 DNA Binding Superfamily AT3G18990 25.937 2.72e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu11g00701 B3 1.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00701 - - pvu:PHAVU_011G050700g 565.459