Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00700 ATGACAATGGGAGACTTTTCATTTTACCAAAAAGCTTTAATTATACAAGGAAATGGCAGGGAGACGTGGCAGATGGATTATCATCAGGGCAACCCAGTCTTCTTCATTATCATCAACAACACCAAGTTACAGAAAGTTCCAGAGGAGTTTCTGAAGCATTTGAATGAAGACTTGCAAAATGCAATTCTTATTGGTCCTTCTGGTGATAATTGGCAAGTAACTATTTTGAAGAAAGAAAATAACATTTATTTGCAAAATGGTTGGTCACAATTTCTGACAGACAACTCAGTAATGCTTGACGATTTCTTGCTTTTTACATATCATGGAGGAAACTGCTTCCATGTTCAAATTTTTGGTAGGAATGGATTGGAGAGACTACGTTTCAAACAGCCAAGACAAGAAAAAGTTCTCATCCCAAGTTTGGCGAGGACAAAGAAGAGCTCACAGAGAAGAACTTTTGCCAGTTCATTCCTCCACCAAGCCAAGTCTTGTAGAAAAGATCTGTCTTTCAGCAACAAATTCTCACTTTCTAAGGACTTCTCAAAGCTTAAGAGTTCAGTTAAAATTGAAAGTTCTGAAGCATGCAATTTGGCAGACTCTTTTACCTCTCGCAATCCCCATTGGAAGCACCTCATGACAAAATGCAACGTAGAAGATCACTGCACATTGCCAATTGCTACTGAGTTTGCCAGGAAGCATATTCCTGAAGCAGTGAAACAGATCATTCTTTGGAACTCAGAAGGAAAATTTTGGGAAGTGGTAGTGACTTGGTTTGGATGTCAAAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGGCTCATGAGAGGTGACACTTGTATATTTGAACTTGAAGATGAAAACCATTTGAGTGTTCACATATTCAGAACCGGATTCTATACACCAAAACCGTATTGA 939 0.3866 MTMGDFSFYQKALIIQGNGRETWQMDYHQGNPVFFIIINNTKLQKVPEEFLKHLNEDLQNAILIGPSGDNWQVTILKKENNIYLQNGWSQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGRNGLERLRFKQPRQEKVLIPSLARTKKSSQRRTFASSFLHQAKSCRKDLSFSNKFSLSKDFSKLKSSVKIESSEACNLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPEAVKQIILWNSEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDENHLSVHIFRTGFYTPKPY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00700 312 CDD B3_DNA 46 118 IPR003340 GO:0003677
Lapu11g00700 312 SUPERFAMILY DNA-binding pseudobarrel domain 28 122 IPR015300 -
Lapu11g00700 312 ProSiteProfiles B3 DNA-binding domain profile. 46 121 IPR003340 GO:0003677
Lapu11g00700 312 Gene3D - 186 305 IPR015300 -
Lapu11g00700 312 SUPERFAMILY DNA-binding pseudobarrel domain 203 305 IPR015300 -
Lapu11g00700 312 ProSiteProfiles B3 DNA-binding domain profile. 208 305 IPR003340 GO:0003677
Lapu11g00700 312 SMART B3_2 34 121 IPR003340 GO:0003677
Lapu11g00700 312 SMART B3_2 208 305 IPR003340 GO:0003677
Lapu11g00700 312 CDD B3_DNA 212 303 IPR003340 GO:0003677
Lapu11g00700 312 Gene3D - 24 122 IPR015300 -
Lapu11g00700 312 Pfam B3 DNA binding domain 45 120 IPR003340 GO:0003677
Lapu11g00700 312 Pfam B3 DNA binding domain 211 304 IPR003340 GO:0003677
Lapu11g00700 312 PANTHER B3 DOMAIN-CONTAINING 31 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00700 Lapu-Chr11 10077715 10093571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00700 31 301 B3 DNA Binding Superfamily AT5G18090 26.936 2.73e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu11g00700 B3 6.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00700 - - vum:124823151 551.977