Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00689 ATGGAAGAGCATTTTTCCCCTAAGGGGAAGGAAAGTGGCTATTGCACATCTCCTGGGGCTCATTTGGAGGAATCAACATCGGTAGATGGTGGAATGAAAAAATCGGCTTCAGAGGACATGTTTAGCAACTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTGGAACAACAGCTCATCTATGACTTATCAGAGTTTGGCTAATGCGTTTTCATCATTTTCCTCAGCACCATATCCACCATCCGATGGATTGAATTTAGTGGAACATGGCAGTGGTTCATGCTTTATGACAGAAGTCAGTGAAATTCATAATGGTATGGAAAGTTCTCCTAGTTGTGAGGAGAGAAGTATATTTCAGCAAATGGACATCCAACTTGGGTTCTTAGATGAAGCAAATGATTCAAATAGCTTTGATTCAGAACAAAATTGTAACGACACATATCAGCAACTTAACACCTCAGACATGTGCAATTACTTAATCTCAAGGTCATCAGGTAGGCCACTTGATGATAGAATGTTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGGGGGTATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGAGAAGTGTCAAGGGCATTCACATTTTCTGCAGAAGGAAAGAAAGGATCATGTCCGGGGCTTCCTGCTCGAGTGTTTATATCACATGTTCCTGAATGGACTTCCAATGTTGGTTACTATAATAAAACCGAGTACTTAAGGTTGGACCATGCAATGAATCATGAAATTCGTGGATCTATTGCTCTTCCTATTTCTGATATGCATTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACTACAAAGGAAAAAGCTAATTTTGACCGAGAATTAGAAATTGTTACTCATGCACTCCAGCTTGTAAATTTAAAGACTACTATGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATAATTGATGTGTTACGTGCCGTGTGTCATGCACATAGATTGCCACTAGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAGCTGAGAGAACACGAATCAAAGAAGGTCATACAAGTTCTAACGAAAAATGTGTGCTATGTATTGAGGAATCAGCTTGCTATATAAATGATGAAGCACTAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCAGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTAGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTATACCAATGATGATGATTACATACTAGAATTCTTTCTACCTGTGAACATGACAGGGAGTTCAGAACAACAACTTCTATTGGATAATCTCTCAGGTACAATGCGGAGAATATGTAGGAGTTTGAGAACAGTTTCAGATGCTGAGTTAACAGGAAAAGAAGGATCCCTAGCTGGATTTCCAAAGGAAAAAGTCACAAGTTTTTTTCCTATGTCCAGGAGAAACTCTCAGATAACATTCACTAATGATGATCATGATTCGGTCCAGAAGATGTCCTTGAAGGCATCTAACAATGGAATTGAAGCTGCTCATAGCCAGGTAATGAATGGATCAAGAAAACAGATTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTCAGTTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCCGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGGAAGATCAATAAAGTGAATCGTTCACTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCTGGAGGATCAATGATGCAAGAAATTGAAACACATAAATATGTTCTGTTTCCTGAGAAAAGTGCTGTAAAAGACCCTAAGCATGCAACACAAAAAGCTGTCTCAGTAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATGATGATGGTGGTGTTTGTTTGGTGGGAAACAAGATTGTGCACTCAAAAAGTGTGCTTATATCTAAAACCAGTGAGGGAGGATTGAAAAAAGACAACGTTTCTTCTGATGATTGTTGTGAAGATTCAAAATCAGTGGCCATGAATGATGGATCAAGCCAGAAGGCCAGCAATCAGGCCAAGAATCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACTGATGAGGTTGAAGTTGGAGTAGATGGGGGAGAGGGAATTGATGAACATAACCACCTTAATTCTTCAAGCACTACAAACTCATCTAATTGCTCTGGCTCAATGATGCATGGCAGCTCGTCATGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAATCAACTTGTGTTGATAGTGGGTCAAAAATGATTGTCAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCAGCCGCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAACTCCAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAGTGTATAGAAATTTTGGATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGCCTTGTGTTTTAAGCAGTCGTGGCAGCAACAATCGCTTCTTCTCAGACAGTTCATAG 2907 0.4045 MEEHFSPKGKESGYCTSPGAHLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWNNSSSMTYQSLANAFSSFSSAPYPPSDGLNLVEHGSGSCFMTEVSEIHNGMESSPSCEERSIFQQMDIQLGFLDEANDSNSFDSEQNCNDTYQQLNTSDMCNYLISRSSGRPLDDRMLRALSFFMESADGGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKKGSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLDHAMNHEIRGSIALPISDMHSQVPCAVLELVTTKEKANFDRELEIVTHALQLVNLKTTMPPRLLPQCLSSNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDEAERTRIKEGHTSSNEKCVLCIEESACYINDEALGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAELTGKEGSLAGFPKEKVTSFFPMSRRNSQITFTNDDHDSVQKMSLKASNNGIEAAHSQVMNGSRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSMMQEIETHKYVLFPEKSAVKDPKHATQKAVSVVSAPGSTSENSTIKLDDDGGVCLVGNKIVHSKSVLISKTSEGGLKKDNVSSDDCCEDSKSVAMNDGSSQKASNQAKNQDCPEQTCSISLVTDEVEVGVDGGEGIDEHNHLNSSSTTNSSNCSGSMMHGSSSCSQSFENQKHSKVKSTCVDSGSKMIVKASYRGDTIRFKFDPAAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECIEILDDIGTRCVKFLVRDVPCVLSSRGSNNRFFSDSS* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00689 968 SUPERFAMILY CAD & PB1 domains 863 952 - -
Lapu11g00689 968 SMART PB1_new 868 950 IPR000270 GO:0005515
Lapu11g00689 968 MobiDBLite consensus disorder prediction 759 791 - -
Lapu11g00689 968 MobiDBLite consensus disorder prediction 1 34 - -
Lapu11g00689 968 MobiDBLite consensus disorder prediction 813 836 - -
Lapu11g00689 968 ProSiteProfiles PB1 domain profile. 868 950 IPR000270 GO:0005515
Lapu11g00689 968 Gene3D - 865 947 - -
Lapu11g00689 968 CDD PB1_NLP 869 949 IPR034891 -
Lapu11g00689 968 ProSiteProfiles RWP-RK domain profile. 579 667 IPR003035 -
Lapu11g00689 968 MobiDBLite consensus disorder prediction 821 836 - -
Lapu11g00689 968 Pfam RWP-RK domain 599 647 IPR003035 -
Lapu11g00689 968 Pfam PB1 domain 871 949 IPR000270 GO:0005515
Lapu11g00689 968 PANTHER PROTEIN NLP8 113 958 IPR045012 GO:0003700
Lapu11g00689 968 MobiDBLite consensus disorder prediction 769 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00689 Lapu-Chr11 10010012 10015925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00689 1 964 NLP Transcription Factor Family AT2G43500 48.728 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lapu11g00689 PB1 2.4e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00689 - - gmx:100793770 1640.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00273 5 2214478 2221972 Lapu11g00689 11 10010012 10015925 PCT