Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00681 ATGCCACTTCCAGCGAAACCAACGAGGGATTCCGACGAGTCTGCGAGCCCTTCCAACAACCTGTGGGTGGGGAATCTCGCCCCCGATGTCACCGACGCCGATCTAATGCAACTTTTCGCCAAATACGGCGCACTCGATAGCGTCACCTCTTATTCCGCTCGTAGTTACGCCTTCGTATACTTCAAGCGCGTCGAAGACGCCAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCATGCAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGTTGAATTTCGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTTCAGGGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAAAGAATAGGTGGGGAGCATATTCGTGTTGACTTTCTTCGATCACAATCTACAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGACAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGGAAAGATGATGGTCAACCGAGTAATGTTTTGTGTATTGGTTATCCTCCTGCTGTTCAGATCGATGAACAAATGCTCCACAATGCTATGATTTTATTCGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAACTATTCTATTGTCGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCCAGCAATGACTTAGTACATGGCAGTGATTACCCTGCCTTTTTTCCTGGAAGTAATGGACCGAGGCCTGATGTATTGCTAAATGAGCATCCATTTCGACCATTACAAATGGATGCATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTACTGGTCAGTTACCACCCAGTGGTATTATGGGTCCAAATGTACCAATGCGACCTTTTGGTCCTCACAGCGGTGTTGACTCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAACGCAGTCCACAAATTTCAGGATGGTAGCTCCAAGAATAATATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGAATGCTTTCTTCTCCTGCACCAGGTGCTAGGCATCCTACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGACGAAGCCCCATTTCCTTTGAGGAATATAAATGATCGGGGGTTAGCCCTAGAGCAATCTTATGGTATAGATCCATCAATTGATGGAGGTGGCTCTGGTCCACATGCAAACATTCAAGGAAAGAGTCACCTTGGTCCAATGAGCTCAAGGATTACAGCTGGAGTACATGGTATGGTTCAACCTGATATTGATCATATTTGGCGTGGAATTGTTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTACCAATTGGGAAAGGGATTGGGACCGAGCTTCCGGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGACGATTTTGCATCATATACTGAATTCCTTCGCTATCTTAGTGCAAAAAATCGTGCCGGTGTTGCCAAATTTGTTGATAACACCACATTATTCTTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTCAGTGGACCTGAGCGACTATATGGTGTGGTTCTGAAGTTTCCTCAAGTGCCAAGTAGTGCACCTATGCAACAACCATCACACTTGCCTGTACCGACAAGTCAGTATATGCAGCAGATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTGTGAAAGAGGAACAGGTTTTGTCAATGGATTATAACAGACTGTTGCATGAGGATTCTAAGCTTCCTACTAAACCAGTCTACCCACATACAGGTGGGCCCCCTTCAGTTCATTCTGTGCCTCGAGATTATGCTCCTAATAATACTGTTGCTGGGTCCCAAGCAGGAGTTGCATTAACACCTGAGCTGATTGCAACTTTAGCTTCTTTTCTCCCTACAACTACACCATCATCTGTCACTGATGGTGCCAAGTCTGGAGTTGGTTCCTCGTCCTTGAAGCCTCCATTTCCTCCTGTGGCACCAAATGATGGAAGTCAGTCCTATTTATGGAAACAGGATAATCAAATTGCTGATCAAACCACTCATCCTCCTCAACACTTGAGGAGTATGTATAACGTTCACAATGCTCACTATCAGCCCTATCCACCGGTTTCTGCTCCAGCTGGCAATCCTGCTCAAGTGGTCTCCGGCAGTTCTCATATCCCAGATACTGCAGCCAGCATGCATCAGCAAGGCGCTATTTCATCTAGACACATGCCTAATTTCATGATGCCCACTCAAAGTGGACAAGTAGCTGCATCCCCTCATGGCAGTCAGCATTATCAAGTTGAAGTGTCCCCCAGCAATCAGAAAGGCTTTGGAGTGGTGCAGGGAACGGATGCTTCTGTTTTATACAATTCTCAGGCTTTCCAGCAGCCTAATAACAATTCACTGTCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCTAATTCTTCACAGCAGCAAACTGCCATGCCATATACAGTAGATCAAGTAAACTCAGATACCCCAAATCATCAACTTCCTGCTTTTGGAGTCGGTCAAGGCACACCAGAGGTGGAGGCTGATAAGAACCAGAGATATCAGTCGACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAAGCCCCAGGAGGACATGGACCAGGAATTCAACAATGA 3000 0.4457 MPLPAKPTRDSDESASPSNNLWVGNLAPDVTDADLMQLFAKYGALDSVTSYSARSYAFVYFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISPAVTKEELEVEFRKIGKIEDFKFFRDRNTACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQSTKRDQLLDYGQFQGKSLGPSDAYSGQKRPLHSQPPMGRKDDGQPSNVLCIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPAFFPGSNGPRPDVLLNEHPFRPLQMDAFGHNRPMVPNNFTGQLPPSGIMGPNVPMRPFGPHSGVDSVISGPEFNEINAVHKFQDGSSKNNMGPNWKRPSPPAPGMLSSPAPGARHPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNINDRGLALEQSYGIDPSIDGGGSGPHANIQGKSHLGPMSSRITAGVHGMVQPDIDHIWRGIVAKGGTPVCRARCVPIGKGIGTELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVVLKFPQVPSSAPMQQPSHLPVPTSQYMQQIPPSQTEYGLIPVKEEQVLSMDYNRLLHEDSKLPTKPVYPHTGGPPSVHSVPRDYAPNNTVAGSQAGVALTPELIATLASFLPTTTPSSVTDGAKSGVGSSSLKPPFPPVAPNDGSQSYLWKQDNQIADQTTHPPQHLRSMYNVHNAHYQPYPPVSAPAGNPAQVVSGSSHIPDTAASMHQQGAISSRHMPNFMMPTQSGQVAASPHGSQHYQVEVSPSNQKGFGVVQGTDASVLYNSQAFQQPNNNSLSFQQPNNSIALTNQVSGANSSQQQTAMPYTVDQVNSDTPNHQLPAFGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQAPGGHGPGIQQ* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00681 999 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 983 - -
Lapu11g00681 999 SMART rrm1_1 217 285 IPR000504 GO:0003723
Lapu11g00681 999 SMART rrm1_1 20 87 IPR000504 GO:0003723
Lapu11g00681 999 SMART rrm1_1 97 164 IPR000504 GO:0003723
Lapu11g00681 999 Pfam SPOC domain 507 623 IPR012921 -
Lapu11g00681 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Lapu11g00681 999 MobiDBLite consensus disorder prediction 689 715 - -
Lapu11g00681 999 CDD RRM_SF 21 87 - -
Lapu11g00681 999 MobiDBLite consensus disorder prediction 740 775 - -
Lapu11g00681 999 Gene3D - 206 294 IPR012677 -
Lapu11g00681 999 MobiDBLite consensus disorder prediction 382 419 - -
Lapu11g00681 999 MobiDBLite consensus disorder prediction 740 755 - -
Lapu11g00681 999 FunFam Flowering time control protein FPA isoform A 94 208 - -
Lapu11g00681 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Lapu11g00681 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Lapu11g00681 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Lapu11g00681 999 SUPERFAMILY RNA-binding domain, RBD 7 92 IPR035979 GO:0003676
Lapu11g00681 999 MobiDBLite consensus disorder prediction 182 214 - -
Lapu11g00681 999 FunFam Flowering time control protein FPA 11 93 - -
Lapu11g00681 999 SUPERFAMILY RNA-binding domain, RBD 97 287 IPR035979 GO:0003676
Lapu11g00681 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 289 IPR000504 GO:0003723
Lapu11g00681 999 CDD RRM_SF 98 164 - -
Lapu11g00681 999 Gene3D - 4 94 IPR012677 -
Lapu11g00681 999 Gene3D - 95 175 IPR012677 -
Lapu11g00681 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00681 Lapu-Chr11 9933648 9946146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00681 20 279 Eukaryotic Initiation Factors Gene Family AT2G23350 23.050 1.05e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00681 - - gmx:100777570 1843.94