Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00670 ATGGGACACAGTTCGAAGAAGAAGAAGCGCGGGGGCGGTAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCAAAAGATCACGCTTCTCAATTCGGCGCCGACGATTACGACCAGCTCTCCGAAGAGATTACCGCATTATGCGCTATTTTCCAAGAAGACTGCAAAATTCTTCCAGGATTGCCTCCTCGTATAGTTATTAAGCTCAGGCCTTACTCAAAGGACATGGGTTATGAGGACCTAGATGTTTCTGCTACTCTTGTTGTCGGGTGTTTGCCTGGGTATCCTTTCAAGTGTCCCAAACTGCAAATTACACCGGAGAAAGGGTTATCAGAAGCTGATGCTGATAAGCTTTTGTCTCTCCTCCATGACCAGGCTAATTTAAATGCTAGGGAGGGACGAGTAATGATCTATAATTTGGTTGAGGCTGCTCAAGAATTTCTTTCTGGTATTGAGCCAATTGCCATATCAAATGATTCTAAGCTTCTACACTCAATTGTGGAAAGCAATGAAGAATTGTTTACCAAGGATAAGACATCTTTAAGTAAGAAGGATTCTTTTGTTTATGGTTTTATAGACCTTTTCAGTGGCTATGGAGAAACATGGAGTTGGGGTTTTGGAATGGATGAAACTGCTGCAAAAAGTTCTCCTCTTCCCTCGTCTAAGTTAGATGCCTCAAAACAACACTTTGAGGCTCGTGTGAAGAAATCTAATAGTAAGGAAACACCATTAGTTATACAAGAACTTCTTGCCAAATTAGATACTGTCGGAGAAGTTATCGAAGACAACAAAAATAGTTTATCTTTGACTAGTTCAAGTAGATCTTCAGTGGAGGATTTTGTTGGGAACGACAATGAAGGTGAGAAAGAGGTAATATATGATTTTCTTCTTTATTTTATTGTTGATGAGTATACAACAGAAAATAATGAAGATATTAATGAAAGTGAGTCTTCAGAGGCTCTGCCTTCTGATTCCTTGCCTCATCTTCAACCATCTCAAACAGTTGAAAAGGATATAATAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAAGGGATCTTTGGCTGACCATTTACCACAAGTGGTAACGGAGCTATACAATTTAGGGATCATTTCTGATTTAGCACGCGAAATGGCATCTAAACCACCTTCCATTTTCAACAAAACCTTCGATCGTGTTTTCCAGAAACATCTGGCTTCATCTGGAATATCTCAATTTTGGAAGCCTGGTCTTGGAGGCTCAAACACGGTTCCCCACAGTTCTCGATATTTGAACGATTTTGAGGAGTTGCATCCTCTTGGTCATGGTGGTTTTGGTCATGTCGTATTGTGCAAAAATAAACTTGATGGAAGGCAATATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTATGGTGATTCTGCTTCGGGTTCAAAGACTACAGTAAGCTCTACTTTCACCTCTAAAGCTGCAACTTCCAATGATGTCTTTGGGCATGAGAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAATACTGTCCCAGGACTCTTCGCCAGATGTTTGAATCATATAATCAATTTGACAAAGAACTGGCTTGGCATTTGTTTCGTCAAATAGTGGAAGGCTTGGCACATATACACGGACAAGGAATAATTCATCGGGACTTAACACCAAGTAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTAGAGCAGCTGGATCAAGATCTGGGCCACACTGCTGATGCAACTGGAGTTTCCATTGATGGCACTGGACAGGTGGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCGAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCATCCATTTGGGACAGCAATGGAGAGGCATGTTGTTTTATCTGATTTGAAACAGAAAGGGGAAGTTCCACCAATTTGGGTTGCTGAGTTTCCAGAACAGGAATCCTTACTGCGGCAGTTAATGTCTCTGGCTCCTTCAGATCGTCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCAGCGAATGGAGTCTGAATTATTGGATGGCAATTCTTTATGTTCAGATATCCTTAGAACAATGCAGAAATCAGAGGATACGAGCATATATGATAAAGTTTTAAATGCTATCTTTGACGAAGAGATGCTAAGCACAAAACACATTCGTCAGGTTGGTAGATTGGGATCAGTTGGAGATAGCAGTTCATCTATTCAGTACACAGAATTTGAAACTGAGGTTCGGGATTATGTTGTAGATATGAATAGGGAAATTTTCAGACAGCATTGTGCAAAGCACCTAGAAATATCAACAATGAGATTATTGGAAGATTGTCCACAATTTAATAGAAATGCAGTTAAACTTCTGACACATGGAGGAGACATGCTTGAACTTTGCCATGAGTTGCGTCTTCCTTTTGTAAACTGGATTATATCTAACCAGAAATCTTCATTTAAACGATACGAGATATCATGTGTCTTCAGAAGAGCAGTTGGACATTCATCACCAAATCGCTACCTTCAGGGAGATTTCGACATTATTGGTGGCACCTCGGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGATGTAGTCACTTGTTTTTTTCATGCAGATTCATGTGACATTCATCTCAACCATGGTGACCTTCTCGATGCAATTTGGTCATGGATTGGAGTCAAAGTAGAACACAGACTCAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGCCCACAATCCTCAGAAAGGAAATCAAAATGGGTCGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAGGCTATGGTAAATAGGTTGCAGACTGTAGGTTTAAGATTTTGTGGATCTGCAGATCATGCACTTCCCCGATTAAGAGGAGCTCTTCCATCCGATAAACGTACATTCAAGGCTCTTGATGAGTTGTCTGAACTTGTCAGTCTCCTGAGAATTTGGAGGATTGACAAAAATATATATATAGACGCATTAATGCCACCAACTGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTCCTGGATCTCTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGGCGATATGACTATTTGCTTCATCAACTATGGAGAAGTGACTGTGTAGAAAGGAAATCCTCCCACTGGTGTGGGCACTAG 3357 0.4096 MGHSSKKKKRGGGSGRRSKGRTQSKDHASQFGADDYDQLSEEITALCAIFQEDCKILPGLPPRIVIKLRPYSKDMGYEDLDVSATLVVGCLPGYPFKCPKLQITPEKGLSEADADKLLSLLHDQANLNAREGRVMIYNLVEAAQEFLSGIEPIAISNDSKLLHSIVESNEELFTKDKTSLSKKDSFVYGFIDLFSGYGETWSWGFGMDETAAKSSPLPSSKLDASKQHFEARVKKSNSKETPLVIQELLAKLDTVGEVIEDNKNSLSLTSSSRSSVEDFVGNDNEGEKEVIYDFLLYFIVDEYTTENNEDINESESSEALPSDSLPHLQPSQTVEKDIIMVHMLRLVCASKGSLADHLPQVVTELYNLGIISDLAREMASKPPSIFNKTFDRVFQKHLASSGISQFWKPGLGGSNTVPHSSRYLNDFEELHPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSYGDSASGSKTTVSSTFTSKAATSNDVFGHENQLESTYLYIQMEYCPRTLRQMFESYNQFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHTADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGEVPPIWVAEFPEQESLLRQLMSLAPSDRPSATELLQNAFPQRMESELLDGNSLCSDILRTMQKSEDTSIYDKVLNAIFDEEMLSTKHIRQVGRLGSVGDSSSSIQYTEFETEVRDYVVDMNREIFRQHCAKHLEISTMRLLEDCPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDVVTCFFHADSCDIHLNHGDLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGSADHALPRLRGALPSDKRTFKALDELSELVSLLRIWRIDKNIYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGALLAVGGRYDYLLHQLWRSDCVERKSSHWCGH* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00670 1118 ProSitePatterns Tyrosine protein kinases specific active-site signature. 582 594 IPR008266 GO:0004672|GO:0006468
Lapu11g00670 1118 MobiDBLite consensus disorder prediction 1 33 - -
Lapu11g00670 1118 Pfam Histidyl-tRNA synthetase 883 1102 IPR041715 -
Lapu11g00670 1118 ProSitePatterns Protein kinases ATP-binding region signature. 433 457 IPR017441 GO:0005524
Lapu11g00670 1118 Gene3D Ubiquitin Conjugating Enzyme 29 153 IPR016135 -
Lapu11g00670 1118 FunFam eIF-2-alpha kinase GCN2 795 1114 - -
Lapu11g00670 1118 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Lapu11g00670 1118 SUPERFAMILY Protein kinase-like (PK-like) 423 777 IPR011009 -
Lapu11g00670 1118 Coils Coil 984 1004 - -
Lapu11g00670 1118 FunFam eIF-2-alpha kinase GCN2 30 156 - -
Lapu11g00670 1118 ProSiteProfiles Protein kinase domain profile. 427 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00670 1118 MobiDBLite consensus disorder prediction 1 16 - -
Lapu11g00670 1118 FunFam eIF-2-alpha kinase GCN2 547 740 - -
Lapu11g00670 1118 Pfam RWD domain 38 147 IPR006575 GO:0005515
Lapu11g00670 1118 CDD STKc_EIF2AK4_GCN2_rpt2 420 727 - -
Lapu11g00670 1118 Pfam Protein kinase domain 427 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00670 1118 Gene3D Transferase(Phosphotransferase) domain 1 546 739 - -
Lapu11g00670 1118 SUPERFAMILY UBC-like 36 147 IPR016135 -
Lapu11g00670 1118 SMART RWD2001b 41 150 IPR006575 GO:0005515
Lapu11g00670 1118 MobiDBLite consensus disorder prediction 308 327 - -
Lapu11g00670 1118 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 66 741 - -
Lapu11g00670 1118 FunFam eIF-2-alpha kinase GCN2 415 543 - -
Lapu11g00670 1118 Gene3D Phosphorylase Kinase; domain 1 415 543 - -
Lapu11g00670 1118 SUPERFAMILY Class II aaRS and biotin synthetases 797 1104 IPR045864 -
Lapu11g00670 1118 Gene3D Bira Bifunctional Protein; Domain 2 795 1111 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00670 Lapu-Chr11 9836619 9858489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00670 433 741 MAP Kinase Kinase Kinase AT1G63700 25.938 2.60e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Lapu11g00670 Pkinase 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00670 K16196 - gmx:100797996 1900.56