Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00661 ATGGGAAGCTGCATTTCAACGCAAGGCGTGAGGACACGCAAGAGGGCGAAGCACCCGAGCAAGCCTTCGTCGCCGCGAGGGCACGGGCACGAGCAGACAAGGAGGCCCAGCGTGTCGGCGCCTAGGTCGAGCATGACGGCGCGTCCGCTGAACGTGGTGGCGAACCCGAGTCCGGGGAACATATTCGACAAGTACCAGTTCGGAAAGGAGCTGGGGCGCGGCGAGTTCGGCGTGACTCACCGCGTGGTGGATTTGGTGAGTGGCGAAGCGTTTGCGTGCAAGAAGATAGCAAAGACGAAGCTGAGGACGGAGATTGACGTGGAAGATGTGAGGAGAGAGGTACAGATCATGAGGCACTTGCCGCGGCACCCCAACATTGTGGCCTTCAAGGAGGCTTATGAGGACAGAGACGCTGTTTACCTCGTCATGGAACTCTGTGAAGGTGGCGAACTCTTTGATAGGATTGTTGCTAAGGGCCATTACACCGAGCGTGCTGCTGCTAATGTTGCCAAGACCATACTTGAAGTTTGCAAGATGTGTCATGAGCATGGAGTAATACACAGGGACTTGAAGCCTGAAAATTTCTTATTTGCAGATGCAAGCGAGACTGCTGTATTGAAGTCAATTGATTTTGGCCTTTCCACCTTCTATGAGCCTGGTGAAAGATTCAGTGAAATTGTTGGAAGTCCTTATTACATGGCTCCCGAGGTTTTAAGACGTAACTATGGACAAGAAATTGATGTCTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCCGAGGAAGGGATTGCACAGGCCATCATTAAGGGTAGAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACATCTAGTTAAGCGCATGCTTGATCCAAGTCCATTCACCCGGATAACAGTTCAAGAAGTTCTTGATCATTCCTGGATACAAAATAGGGAGCATCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGAATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGAAAGGTTCTTAGAGTGGTAGCGGATAACCTGTCAGATGAGCAAATTGAAGTGTTTAAGAAAATGTTCGATATGATGGATAAGGACAAAAATGGAAACTTGTCATTTGAAGAACTCAAAGATGGGCTTTCAGTGATTGGACACGCCATTCCTGATCCTGATGTCCAAATGTTAATGGAAGCTGCGGATAGTGATGGAAACGGCACCCTCAACTATGATGAGTTCATCACAATGAGTGTTCACATGAAAAAGATCGAAGGTGATGAGTATCTCTCTCAAGCATTCCGTTACTTTGACAAGAATCAAACCGGATATGTTGAGTTTGCGGAGTTGAAAGATGCCTTATCAGATGATGACTTGGAAGTCATGGACGACCAAGTTATCAAAGACATTCTAAATGATGTTGACTTGGATAAGGATGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCCTCTCGCCAGTATTCAAGAGCATTGCTGAATGCATTAAGCTTCAAGATGTTTAAAGACTCATCTAGCAAAGTGTAA 1611 0.4612 MGSCISTQGVRTRKRAKHPSKPSSPRGHGHEQTRRPSVSAPRSSMTARPLNVVANPSPGNIFDKYQFGKELGRGEFGVTHRVVDLVSGEAFACKKIAKTKLRTEIDVEDVRREVQIMRHLPRHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKMCHEHGVIHRDLKPENFLFADASETAVLKSIDFGLSTFYEPGERFSEIVGSPYYMAPEVLRRNYGQEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIKGRVDFTRDPWPKVSDEAKHLVKRMLDPSPFTRITVQEVLDHSWIQNREHRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQIEVFKKMFDMMDKDKNGNLSFEELKDGLSVIGHAIPDPDVQMLMEAADSDGNGTLNYDEFITMSVHMKKIEGDEYLSQAFRYFDKNQTGYVEFAELKDALSDDDLEVMDDQVIKDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRALLNALSFKMFKDSSSKV* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00661 536 SMART efh_1 441 469 IPR002048 GO:0005509
Lapu11g00661 536 SMART efh_1 405 433 IPR002048 GO:0005509
Lapu11g00661 536 SMART efh_1 369 397 IPR002048 GO:0005509
Lapu11g00661 536 SMART efh_1 478 506 IPR002048 GO:0005509
Lapu11g00661 536 FunFam Calcium-dependent protein kinase 1 67 150 - -
Lapu11g00661 536 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Lapu11g00661 536 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Lapu11g00661 536 Gene3D - 331 506 - -
Lapu11g00661 536 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00661 536 FunFam calcium-dependent protein kinase 13 151 330 - -
Lapu11g00661 536 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Lapu11g00661 536 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00661 536 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Lapu11g00661 536 FunFam Calcium-dependent protein kinase 7 331 507 - -
Lapu11g00661 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Lapu11g00661 536 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Lapu11g00661 536 Gene3D Transferase(Phosphotransferase) domain 1 151 330 - -
Lapu11g00661 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 59 496 - -
Lapu11g00661 536 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00661 536 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Lapu11g00661 536 SUPERFAMILY Protein kinase-like (PK-like) 44 332 IPR011009 -
Lapu11g00661 536 Pfam EF-hand domain pair 440 504 IPR002048 GO:0005509
Lapu11g00661 536 Pfam EF-hand domain pair 368 429 IPR002048 GO:0005509
Lapu11g00661 536 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Lapu11g00661 536 SUPERFAMILY EF-hand 359 509 IPR011992 -
Lapu11g00661 536 CDD EFh 370 429 IPR002048 GO:0005509
Lapu11g00661 536 MobiDBLite consensus disorder prediction 36 52 - -
Lapu11g00661 536 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Lapu11g00661 536 MobiDBLite consensus disorder prediction 1 52 - -
Lapu11g00661 536 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Lapu11g00661 536 CDD STKc_CAMK 64 322 - -
Lapu11g00661 536 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00661 Lapu-Chr11 9766456 9770057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00661 1 531 EF-hand Containing Proteins AT2G31500 65.867 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu11g00661 Pkinase 8.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00661 K13412 - gmx:100818929 973