Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00660 ATGGACTCGGAGGATGATATGCACGATGCCAACGACATCGAGTCCCTCGACGACGACGATTTCTACAGCGGGGAGACCGAGGATGCACCCTTGGACTATTACAGCGATTACGATGATGATGCCGATGATTACTTCGAAGACGCCCACAGGATTGAGTCTCGTCGTCCCGAGCAAAATTTTACCATTTTGAAGGAATCTGATATCCAACAAAGACAGGAAGATGATGTCACTAGAGTAGCAACTGTGCTTTCCATATCAAGAGTTGTTGCAAGCATACTACTCCGTAATCACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCTGATGAAGAACGAGTCAGAAAAACTGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCATGATGATACTAGAGAGCTTACATGCGGTATCTGTTTTGAAAATTATCCTCGGGCTAGAATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAGTGATGGTCCTGGATGCTTGATGCTGAGATGTCCTGATCCCACTTGTGATGCTGCTGTTGGTCAAGATATGATTAATCTTTTAACATCTGATGAAGATAAGCAGAAATATACACGTTACCTTCTTAGATCATACGTTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAACATGCAGTCACTTTTGATGCCGGTAGTGGTGTGAATTATGATGTCTCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCGGTGGACTGTGGGACTGTGGCAAAGTGGATTTTGAAGAACAGTGCGGAGTCTGAAAACATGAATTGGATACTTGCTAATTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACTTGCACACCACCTTGTAAATATGAATTTTGCTGGCTATGCCTTGGTGTATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGATATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCACTAGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGATATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACAGAGGCCTGGCTACAAATAGTTGAGTGTAGGAGAGTACTGAAATGGACATACGCATATGGGTTCTATTTACCGGAGCATGAGCATGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCAGAAAAGGAACTTCAGCCATTCCTTTGTGCTGATGACCCATCTAAAGAGTTCAATGACTTTCGTACAAAACTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTTCCTTGAGCAAAGCAACGAGCTCAAAAAATAGTGCTGGGAGCAGTAAAGGGAGATCTGCAAGAGTAAAGGGAACTTTTCGAACCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTCAAATCTGCAACCACATGCCAGATGTGCTATCAACAGCGTCGATGA 1770 0.4316 MDSEDDMHDANDIESLDDDDFYSGETEDAPLDYYSDYDDDADDYFEDAHRIESRRPEQNFTILKESDIQQRQEDDVTRVATVLSISRVVASILLRNHNWSVSRVHDAWFADEERVRKTVGLLEKPIVQHDDTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSISDGPGCLMLRCPDPTCDAAVGQDMINLLTSDEDKQKYTRYLLRSYVEDNKKSKWCPAPGCEHAVTFDAGSGVNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADDPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGASLSKATSSKNSAGSSKGRSARVKGTFRTSMSSRMNDDSHWCCEHCTYANVKSATTCQMCYQQRR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00660 589 SUPERFAMILY RING/U-box 288 336 - -
Lapu11g00660 589 MobiDBLite consensus disorder prediction 524 555 - -
Lapu11g00660 589 CDD Rcat_RBR_ARI7-like 292 346 - -
Lapu11g00660 589 Pfam Ariadne domain 356 518 IPR045840 -
Lapu11g00660 589 CDD BRcat_RBR_ANKIB1 213 278 - -
Lapu11g00660 589 FunFam RBR-type E3 ubiquitin transferase 131 220 - -
Lapu11g00660 589 Gene3D - 265 520 - -
Lapu11g00660 589 SUPERFAMILY RING/U-box 207 276 - -
Lapu11g00660 589 Pfam IBR domain, a half RING-finger domain 206 269 IPR002867 GO:0008270
Lapu11g00660 589 Pfam IBR domain, a half RING-finger domain 286 333 IPR002867 GO:0008270
Lapu11g00660 589 ProSiteProfiles TRIAD supradomain profile. 133 347 IPR044066 -
Lapu11g00660 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Lapu11g00660 589 SMART ibrneu5 273 343 IPR002867 GO:0008270
Lapu11g00660 589 SMART ibrneu5 206 269 IPR002867 GO:0008270
Lapu11g00660 589 SUPERFAMILY RING/U-box 132 215 - -
Lapu11g00660 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 221 IPR013083 -
Lapu11g00660 589 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Lapu11g00660 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 435 IPR031127 GO:0004842|GO:0016567
Lapu11g00660 589 MobiDBLite consensus disorder prediction 1 35 - -
Lapu11g00660 589 FunFam RBR-type E3 ubiquitin transferase 270 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00660 Lapu-Chr11 9757275 9765318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00660 18 588 ARIADNE family AT1G65430 70.103 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00660 K11968 - gmx:100795162 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00302 5 2461199 2470456 Lapu11g00660 11 9757275 9765318 PCT