Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00646 ATGTCAACGACCAACGCATCCAGCGACGGCGCTCCATCTCTCCACTTCGATACGCCGACGCTGAACCGGGAGTCCGCGGCGCTTCTCCACTCGATTTCCGAGCACGGCGGGTACGCGTACGTGAGCATGGCGGCGCTGGCGGCCGGCGGCGATATTCGCGCCGCGGAGGCGGCTCGTGAGATGGCGTGGGAGCAGCTTCACTCCGGTCCGTGGGACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCAATGGCCTGCCTCCACGTGGCGCGACACCACTACGGCAACGGCGAGTTCAGGGAGGCGCTTAGGGTTTTGGATTTGGGAATCATCATGGGAGGGACTCTCCTCCGCAAGGATTTGGACTCCGCCGTCTCGAAAGTGTCGGAACAAACACGAGGGAGCGTTAGGGTTTCTGATTTGGGGGACTCCGAGCACCGTCTCGTCGATCGGGAGTTTGATGTGGCTGAGTCTCTTTCTTGTAAGCTTGTGGTGAAGAAATCAGCGCTTTCGTTGGATAAATTCCTGAAGGATCATTACCTATCTCGCTCTCCGGTTATTATCAGCGATTGTATGGCTCACTGGCCAGCCAAGGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCTGGTGACCGCACAGTTCCAGTTGAGGTTGGGAAAAACTATTTATGTGCTGAGTGGAAGCAAGAGCTGATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGATGCCTGTTCTCCTGGGGGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTGCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACTGTAACACCATTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGAATTATTTTTGTCTGAAGGTTGATTTAGATGACGTAGATGAGAGGAAGTTTCCCAAGGTGCAAGAGTTGGAATTTGTAGATTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTGACTACAAGTTTATCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCTGATGCATCCTAA 1236 0.5032 MSTTNASSDGAPSLHFDTPTLNRESAALLHSISEHGGYAYVSMAALAAGGDIRAAEAAREMAWEQLHSGPWDSVLPVWRDAYSMACLHVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDSAVSKVSEQTRGSVRVSDLGDSEHRLVDREFDVAESLSCKLVVKKSALSLDKFLKDHYLSRSPVIISDCMAHWPAKAKWNDEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFIQRIKSDACSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQNYFCLKVDLDDVDERKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSDAS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00646 411 SMART cupin_9 254 410 IPR003347 -
Lapu11g00646 411 FunFam lysine-specific demethylase JMJ30 163 402 - -
Lapu11g00646 411 Pfam Cupin-like domain 174 404 IPR041667 -
Lapu11g00646 411 Gene3D Cupin 163 403 - -
Lapu11g00646 411 ProSiteProfiles JmjC domain profile. 263 411 IPR003347 -
Lapu11g00646 411 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 406 - -
Lapu11g00646 411 SUPERFAMILY Clavaminate synthase-like 169 403 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00646 158 402 Acyl Lipid Metabolism Gene Families AT3G45880 24.916 3.25e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu11g00646 Cupin_8 2.9e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00646 K24444 - gmx:100813075 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00646 11 9637967 9642504 Lapu11g00646 11 9637967 9642504 ECH