Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00642 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATCTTTTTGGATCACCACCAGCAGCAGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCGTATTTTTCGAGCATCATCGACCGTGAGTTCTATGAGCATGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGCTGACACACTTTGTGAATAGTCTTGGTGGGGGTGATGCTGATGCTGATGCTGCTGATGCAGAGGATTCACTTCCTCAGAATCCCTCAACCGTTGTTGCAGTTAAAGAAGAGGTTAATCAACAACCTAAGGATATGCCTTTACCATCCATCAATAATGAACCCCTTGTTCTCCAACAACAACAATCACAACAACAGCATCAACAGCATCAACAGCAAAGTAAGATTAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACACTGGACGACCACCTTTGCCAAACCAGATGGAGACTGGTCGTAGAAGTGCTTCAAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGTTATGCTGCTGTAAGAGGCATGGGAACTATGGGAGCTGTTAATAACAGTACGGAGGAGGCTAGCTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGACTAATTCCATCGAGGGCTGAAATTGGAACCAAAAGCAATACACAGAATAATGCAGAAAATGAAGCTTTTGCTGAAAACCAGGGCAATGAATTTATCCCTGGTTTCCCCGTTGGTTCATGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGATATAGAGAAGAAGATGTAAAACCATTTTCCGGTTTAAACGCACCTGAAAGTCAGAATGAAGCAGGAGGCCAACCGTCTACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTACCTTGCAAAATTCGTGCCAAGCGAGGTTGTGCCACTCACCCTAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGATAATCGCGATAAGTGTACGTGTTCACACAAGCAGCAGCAGCAATAA 1254 0.4378 MESDLQQHPPIFLDHHQQQTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTHFVNSLGGGDADADAADAEDSLPQNPSTVVAVKEEVNQQPKDMPLPSINNEPLVLQQQQSQQQHQQHQQQSKINNYGSSAPQNFYQNTGRPPLPNQMETGRRSASNLIRHGSSPAGLFSNINIESGYAAVRGMGTMGAVNNSTEEASFSPVTRMKNAPNYSSGLIPSRAEIGTKSNTQNNAENEAFAENQGNEFIPGFPVGSWDDSAIMSDNMTGLKRYREEDVKPFSGLNAPESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSDNRDKCTCSHKQQQQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00642 417 Coils Coil 384 411 - -
Lapu11g00642 417 SMART finulus 350 400 IPR011598 GO:0046983
Lapu11g00642 417 Pfam Helix-loop-helix DNA-binding domain 349 395 IPR011598 GO:0046983
Lapu11g00642 417 MobiDBLite consensus disorder prediction 288 307 - -
Lapu11g00642 417 MobiDBLite consensus disorder prediction 291 307 - -
Lapu11g00642 417 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 414 - -
Lapu11g00642 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 394 IPR011598 GO:0046983
Lapu11g00642 417 MobiDBLite consensus disorder prediction 115 162 - -
Lapu11g00642 417 FunFam Transcription factor bHLH130 family 345 414 - -
Lapu11g00642 417 Gene3D - 345 417 IPR036638 GO:0046983
Lapu11g00642 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00642 Lapu-Chr11 9595769 9600232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00642 1 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.844 3.72e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g00642 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00642 - - gmx:100803833 631.713