Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00637 ATGAACAACAACTGGCTTTCTTTCCCTCTTTCCCCTACTCATTCTTCCTTACCATCCCATGATCTTCAAGCAACTCAATACCATCAATTTTCCCTTGGCCTGGTTAACGAGAGCATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACTCATAACAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGACCTTGCTGCTTTAAACGAAATTCAGTCCAATGATTCAGACTATCTGTTCACAAACAACAGTCTCGTGCCTTTGCAAAACCCTGTGGTGGACACACCTAGCAATGAGTATCAAGAAAATGCTAATACTAATTTGCAATCGTTGACATTGTCCATGGGAAGTGGAAAGGATTCTACATGTGAAACCAGTGGTGAAAATAGTACAAACACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGGCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCCATTAGCAACTACGAGAAAGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCCATCAGAAGGAAAAGTAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGTTATGACGTGAAAGCCATTCTCGAAAGCAACACTCTCCCAATAGGAGGAGGCGCTGCAAAACGTCTTAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGCGAAGAGATGATTGCACTAGGTTCATCCACCTTCCAATATGGAACCTCAAGCTCTTCTAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATAAGTTCTCACTTCTCTCACCAAGACCCTATACATCAGGGTTACATTCAAACGCAGCTTCAGTTGCACCAGCAGAGCGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGCGGTTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCTTCATCTGTGTTGGAGAATAATAACAACAATAATAGTAATGTTGGTGGGTTTGTAGGGAGTGGGTTTGGTATGGCTTCGAATGCAACGTCGGGTAACGCGGTGGGCACGGCGGAGGAACTTGGGTTGGTTAAGGTTGACTATGACATGCCGGCGGGAGGTTACGGTAGTTGGTCGTCGGCGACGGCGGTGGAATCCATGCAGACGTCAAATGGTGGTGTGTTCACAATGTGGAATGAGTGA 1641 0.4497 MNNNWLSFPLSPTHSSLPSHDLQATQYHQFSLGLVNESMENPFQNHDWNLINTHNSNEVPKVADFLGVSKSENQSDLAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANTNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDISSHFSHQDPIHQGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNHPALLQGMMNMGSSSSSSSVLENNNNNNSNVGGFVGSGFGMASNATSGNAVGTAEELGLVKVDYDMPAGGYGSWSSATAVESMQTSNGGVFTMWNE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00637 546 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 SUPERFAMILY DNA-binding domain 162 231 IPR016177 GO:0003677
Lapu11g00637 546 ProSiteProfiles AP2/ERF domain profile. 265 323 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 CDD AP2 264 325 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 CDD AP2 162 231 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 Gene3D AP2/ERF domain 163 231 IPR036955 GO:0003700|GO:0006355
Lapu11g00637 546 Gene3D AP2/ERF domain 265 325 IPR036955 GO:0003700|GO:0006355
Lapu11g00637 546 FunFam AP2-like ethylene-responsive transcription factor ANT 162 231 - -
Lapu11g00637 546 ProSiteProfiles AP2/ERF domain profile. 163 229 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 SMART rav1_2 163 235 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 SMART rav1_2 265 329 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 Pfam AP2 domain 266 315 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 Pfam AP2 domain 163 221 IPR001471 GO:0003700|GO:0006355
Lapu11g00637 546 SUPERFAMILY DNA-binding domain 264 325 IPR016177 GO:0003677
Lapu11g00637 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 419 - -
Lapu11g00637 546 FunFam AP2-like ethylene-responsive transcription factor 264 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00637 Lapu-Chr11 9525266 9528091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00637 3 546 AP2-EREBP Transcription Factor Family AT1G51190 64.154 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lapu11g00637 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00637 K09285 - gmx:100788471 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00637 11 9525266 9528091 Lapu11g00637 11 9525266 9528091 ECH