Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00631 ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCAACTCCTCCCATCAATCCATCATTCTATTTTCCTTCCAACTATCATACCTACACAAGTGCCATATCTTCTGCTCAGTTCCAATCCTCTCCTCCTCAAACAAAAGCCCTTCCTTTCCTTCATCTAAGACATGAAGAAGAAGAAGATCTTGAATCTTCATTCAGTGCCATGGAAGTGGACAAGAAAGAGAAAGAGCTAAGTAAATCCTCCAAGTGCTTGGATGAAAAGGATGCTGTGACTGTGGCTTTACACTTAGGGCTTCCAAGCACTAGTGCATCTGCTGATTTAGCTTCAAGCCTATACTCAGCAGAGGTTTCAGACAAAGAAGAAAAAATCACTGATGCTTCGGGGCTTCTGTCAAATAGAATCAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGTCGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAATCTCTAAGGGGCACACAACCAACAGCTATGCTAAGACTCCCTTGCTATTGCTGTGCTCCGGGATGCAAAAACAACATCGACCATCCGAGAGCAAAACCACTGAAAGACTTTAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACATTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGGTCTGATTTCAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCATTTGGATATGGACACACGGCGCATGGAAATGACTGCATGAACCTTGATCAAGATGATGATGAAGCAGGCTCTGAAATTGAACAAGAAAATTAA 993 0.426 MTNSYRSNDLNFWLDLNSPCLLSSPSSSTPPINPSFYFPSNYHTYTSAISSAQFQSSPPQTKALPFLHLRHEEEEDLESSFSAMEVDKKEKELSKSSKCLDEKDAVTVALHLGLPSTSASADLASSLYSAEVSDKEEKITDASGLLSNRINRGQYWIPTSAQILIGPTQFACPLCFKSFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAHGNDCMNLDQDDDEAGSEIEQEN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00631 330 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Lapu11g00631 330 Gene3D Classic Zinc Finger 231 307 - -
Lapu11g00631 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Lapu11g00631 330 SUPERFAMILY beta-beta-alpha zinc fingers 236 274 IPR036236 -
Lapu11g00631 330 FunFam Zinc finger protein WIP2 223 305 - -
Lapu11g00631 330 PANTHER ZINC FINGER PROTEIN WIP2 38 329 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00631 Lapu-Chr11 9474590 9476777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00631 43 328 C2H2 Transcription Factor Family AT1G51220 59.076 5.45e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00631 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00631 - - gmx:100802239 532.332