Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00626 ATGGCGTCGACGGCGATCGAGGAAGTGAGAACTCTCTGGATTGGCGATTTGCAGTATTGGGTGGACGAGTCGTACCTCTCTCAGTGCTTCGCCCACAGCGGCGAAGTTGTTTCCATCAAAATCATTCGCAACAAGATGACGGGCCAGCCTGAGGGCTACGGCTTCGTGGAGTTCGTTTCTCACGCGGCGGCGGAGACCTTTCTCCGTACATACAACGGAACCCAAATGCCCGGTACGGAACAGACCTTTCGGCTTAATTGGGCCTCCTTCGGGGACTCTGGGCCCGACCATTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACGGACTTCCTCCTCCAGGAGACTTTCCGGGCCCATTATCCTTCAGTCAAAGGGGCCAAAGTCGTCACCGACCCCGCCACCGGCCGCTCCAAGGGCTATGGCTTTGTTAAGTTCACCGACGAGGCGCAGAGGAACCGCGCCATGTCTGAAATGAACGGTGTTTATTGCTCCACGCGCCCTATGCGTATCAGCGCCGCTACTCCTAAAAAGAACGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAGTTTCCTGCATACACTGCTCCGGTGAATACTGTTGCGCCAGAAAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACAGAGGAGGAGCTTAAGCAAACCTTTATGCAATTTGGAGATATTGTGTCGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAGTTTGGAACTAGAGCGTCTGCTGAAGATGCGATTCAGAGGATGCAGGGAAAGATAATAGGTCAACAAGTGATCCAAATTTCTTGGGCTAGTACCTTGACTGCTAGACAGGATGTACCCAGTGGGTGGGGCGCTCAGATGGATCCAAATCAGTGGAGTGCCTATTATGGATATGGACAGGGTTATGAAGCATATGCTTATGGTGCTGCTCACGATCCCTCCTTGTATGCTTATGGTGCATACGCTGGTTATGCACAATACCCTCAACAGGTTGAAGGCGGTCAAGAAATGCCAGTATCTATACCTGTGGAGGAGTCGTATGATCCCCTGGCATTGCCTGATGTTGATAAATTAAATGCTGCATATCTTTCAACGCATGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCGCAATCTTTACAGCAAGCATAG 1203 0.5004 MASTAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAETFLRTYNGTQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFTDEAQRNRAMSEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVNTVAPENDVNNTTVCIGNLDLNVTEEELKQTFMQFGDIVSVKIYAGKGYGYVQFGTRASAEDAIQRMQGKIIGQQVIQISWASTLTARQDVPSGWGAQMDPNQWSAYYGYGQGYEAYAYGAAHDPSLYAYGAYAGYAQYPQQVEGGQEMPVSIPVEESYDPLALPDVDKLNAAYLSTHGSSILGRSLWQRTSQSLQQA* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00626 400 Gene3D - 90 185 IPR012677 -
Lapu11g00626 400 SUPERFAMILY RNA-binding domain, RBD 195 315 IPR035979 GO:0003676
Lapu11g00626 400 CDD RRM1_SECp43_like 11 91 - -
Lapu11g00626 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Lapu11g00626 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Lapu11g00626 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Lapu11g00626 400 Gene3D - 199 292 IPR012677 -
Lapu11g00626 400 FunFam polyadenylate-binding protein RBP45 197 293 - -
Lapu11g00626 400 CDD RRM2_SECp43_like 96 175 - -
Lapu11g00626 400 Gene3D - 9 89 IPR012677 -
Lapu11g00626 400 SUPERFAMILY RNA-binding domain, RBD 94 185 IPR035979 GO:0003676
Lapu11g00626 400 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Lapu11g00626 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Lapu11g00626 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Lapu11g00626 400 FunFam Polyadenylate-binding protein RBP47B 88 187 - -
Lapu11g00626 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 288 - -
Lapu11g00626 400 SMART rrm1_1 215 282 IPR000504 GO:0003723
Lapu11g00626 400 SMART rrm1_1 98 172 IPR000504 GO:0003723
Lapu11g00626 400 SMART rrm1_1 11 86 IPR000504 GO:0003723
Lapu11g00626 400 FunFam Polyadenylate-binding protein RBP47B 9 87 - -
Lapu11g00626 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00626 Lapu-Chr11 9412137 9415760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00626 9 303 Eukaryotic Initiation Factors Gene Family AT2G23350 26.299 7.70e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00626 - - gmx:100813616 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00341 5 2836173 2839034 Lapu11g00626 11 9412137 9415760 PCT