Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00621 ATGAGGAAGCCCGAGGTTTCTGGAAAAAACAACTCCAACATTAATAACAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGTGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATTGTCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACTTGTCATCCAACACCTCACCAAATGGAAGCGAGTCCTCGTATGACCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTATAATACCCATCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCCATCGCCATCCATGCATGCCACAGTTCTCAATTCCATAATTGACAGGTTGCCTTTGCTAGATCATGGACTAAACATGCCAACTTCTGGTGAATTCTTCAATGGTACAGGGCAATGCTTCTCATCGCAAAGTGGAGTAGACCACAAAGGTTTTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGGAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGTCTGGGGTGGAGAATTTATTTCAAGAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTCTCAAATATCCAGTAA 984 0.4157 MRKPEVSGKNNSNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSNTSPNGSESSYDPNKDLNMAGFTTYNTHQDQHADFMPMFNSSSPSPSMHATVLNSIIDRLPLLDHGLNMPTSGEFFNGTGQCFSSQSGVDHKGFYLENGGVFGSVNIGAGGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSIILNNCSNKRTENRSGVENLFQEELTMGEWDLEELMKDVSSFPFLDFSNIQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00621 327 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Lapu11g00621 327 Gene3D - 74 144 - -
Lapu11g00621 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Lapu11g00621 327 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lapu11g00621 327 FunFam MYB transcription factor 17 73 - -
Lapu11g00621 327 CDD SANT 75 115 IPR001005 -
Lapu11g00621 327 SMART sant 19 69 IPR001005 -
Lapu11g00621 327 SMART sant 72 120 IPR001005 -
Lapu11g00621 327 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lapu11g00621 327 PANTHER MYB DOMAIN PROTEIN 55 15 278 - -
Lapu11g00621 327 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Lapu11g00621 327 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Lapu11g00621 327 Gene3D - 17 73 - -
Lapu11g00621 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Lapu11g00621 327 FunFam Transcription factor MYB46 74 143 - -
Lapu11g00621 327 CDD SANT 23 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00621 Lapu-Chr11 9377126 9379845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00621 1 323 MYB Transcription Factor Family AT3G08500 45.810 4.47e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g00621 Myb_DNA-binding 9.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00621 K09422 - gmx:100786151 585.874