Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00618 ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACATCAAACCAAACCTCCATGATTTGTCTGATAATGATGATGATGGGAAGAGGAACGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCAGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGAGGCTTGAGGATGATAGGTCGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAGGCACGTGCTGTGGGGCAACTGAGGAATGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGACTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGGGAAGCGCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGGATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCCGAAGCTATAGTACAAATTTAGCCTTCACACCTCCAGAGTACTTGAGGACTGGAAGAATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACCCTGTTGCTTGATCTTCTGAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACGAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAGGTCATTTTTCTAATGATGATGGAACTGAGTTGGTGAGATTAGCTTCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTTGTGACTGCTCTGACCCCTCTTCAGAAAGAAACTTCGGTACTGTCATCTGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCGAAGGAAACAGTTTCATTGACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTGACTGCTGTACATGAGATTTTGGATAAAGTGGGATACAAGGATGATGAAGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCTACAGCCATTGACTGCTATACACAATTCATAGATGGTGGAACCATGGTATCACCTACCGTGTATGCGAGGCGCTGCTTATGCTATCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTCCAACCTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGAACAACACTGGAAACCAGGAAGTATAAAAACTGA 1479 0.4462 MGARCSKFSLCWWPSHIKPNLHDLSDNDDDGKRNEKDPWGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYKGRLEDDRSVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVLSSVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAVHEILDKVGYKDDEDVANELSFQMWTNQIQETLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMQAQSISPTWPTAYYLQAAALFSLGMDNDAQESLKDGTTLETRKYKN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00618 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 23 490 IPR045845 GO:0004672|GO:0009742
Lapu11g00618 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Lapu11g00618 492 FunFam probable serine/threonine-protein kinase At5g41260 137 328 - -
Lapu11g00618 492 Pfam Protein tyrosine and serine/threonine kinase 73 311 IPR001245 GO:0004672|GO:0006468
Lapu11g00618 492 SUPERFAMILY TPR-like 389 488 IPR011990 GO:0005515
Lapu11g00618 492 Gene3D Tetratricopeptide repeat domain 385 492 IPR011990 GO:0005515
Lapu11g00618 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00618 492 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Lapu11g00618 492 FunFam probable serine/threonine-protein kinase At4g35230 385 492 - -
Lapu11g00618 492 SUPERFAMILY Protein kinase-like (PK-like) 39 317 IPR011009 -
Lapu11g00618 492 FunFam probable serine/threonine-protein kinase At4g35230 32 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00618 Lapu-Chr11 9353076 9357435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00618 45 311 Glycoside Hydrolase AT3G07070 34.576 6.28e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lapu11g00618 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00618 - - gmx:732542 959.133