Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00601 ATGGAATCTGATCATGATCAGCAAGCAGCAATATCTGAAAATCCCTCTGATGGGGAGGACCAAGGTGCAAGTCACGTGACATCCAGGTCCTACGAGTGCAACTTCTGCAGGAGGGGCTTCTCTAATGCACAAGCACTAGGTGGGCACATGAACATCCACAGGAAAGACAAAGCAAAGCTCAAGGAACAACAATCTTCAAACCAAACTCAACTTCAACCATCTTTGGACAAGGTTGTCCCTCCACAGGATCAGACCAAGTCTGATGAAGAACGCAACACACCAATATGGAATTGGAATGTGTCTCAAGAAGAACATGTTTCCTCTAGAGCCACTCACACAAGGCAGCTTCCACTCTTTGAAGAATCACCAACTAGCAGTGAAGCACCAAAGCCACAAGGTCAAAATACCACTGAAGGAGCTTTGTCATCTACCCGAGATTCATCATTGGAGTTAGACCTTGAACTGAGACTGGGACCTGAACCACAGGATTCATCAGCAGAACCGGGTACAAGAAATTTTTTTTGA 525 0.4571 MESDHDQQAAISENPSDGEDQGASHVTSRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKEQQSSNQTQLQPSLDKVVPPQDQTKSDEERNTPIWNWNVSQEEHVSSRATHTRQLPLFEESPTSSEAPKPQGQNTTEGALSSTRDSSLELDLELRLGPEPQDSSAEPGTRNFF* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00601 174 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Lapu11g00601 174 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
Lapu11g00601 174 PANTHER OS07G0101800 PROTEIN 1 161 - -
Lapu11g00601 174 MobiDBLite consensus disorder prediction 91 148 - -
Lapu11g00601 174 MobiDBLite consensus disorder prediction 43 174 - -
Lapu11g00601 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Lapu11g00601 174 MobiDBLite consensus disorder prediction 63 81 - -
Lapu11g00601 174 MobiDBLite consensus disorder prediction 8 28 - -
Lapu11g00601 174 MobiDBLite consensus disorder prediction 1 28 - -
Lapu11g00601 174 Gene3D Classic Zinc Finger 18 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00601 Lapu-Chr11 9274733 9275483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00601 10 158 C2H2 Transcription Factor Family AT3G09290 33.951 1.13e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00601 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00601 - - vun:114170729 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00601 11 9274733 9275483 Lapu11g00601 11 9274733 9275483 ECH