Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00593 ATGAATTCGGACACGCAACACGGCTCGCCGTCGTATTGGTGCTACAGCTGCACCCGCTTCGTTCACCTCTCATCGCAAGCTACCATCACCTGTCCCCACTGTCAGAGCGGCTTCATCGAAGAGATTCGCGCCGACGCCACGCCGCGCCACCGTCTCAGCCCTTTCCCCGACGACCATCTTTCTCTCCGCCGACAGGGATTACGCCGCCGCCGTCGTGACGCCGCCGGAAACCGCTCCCCCTTTAACCCTGTCATCGTCCTCCGGGGACCCGGTGATGACTCCGCCGCCGAACACGACGGCCCCAGCACCTTTGAGCTCTTCTACGACGACGGCGACGGCACCGGCCTCCGTCCCCTCCCGCCCACCATGTCAGAGTTCCTCCTCGGCTCCGGCTTCGACCGCCTCCTCGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGTCCGGAGAACCCGCCGGCGTCCAAGGCGGCGATCGAGTCCATGCCGACGATCGAGATCGGCGACGCGCAGGTCGAGACCGACACGCACTGCGCCGTGTGCAAGGAAGCGTTTGAGCTCCACGCGGAGGCGCGTGAGCTACCCTGCAAACATATATACCACTCCGACTGCATCCTCCCGTGGCTCTCCATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGTTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTAACTATTTGGAGGCTTCCCGGCGGGGGATTCGCTGTGGGGCGATTTTCAGGCGGCAGAAGAGCTGGAGAGAATCACTTCCCGGTGGTGTACACGGAGATGGACGGTGGACTGAACACGAACGGAGCTCCGAGGAGAATTTCTCGGTCGGTGAGAAGCAATAGGGTTAGGGAGAGTCGAGGGTTTGGTAGGGTTATTCGCAATTTCTTTTCATTCTTTGGAAGGATCGGTTCTAGAAACTCTTCTTCGTCTTTGTCATCTTCTGAACATGTTTCCGTGAGTAGAAGCCGTAGTCATGTGAGTTCAGTCTTCAACAGAAATTCATACTGTAAATAG 1059 0.5921 MNSDTQHGSPSYWCYSCTRFVHLSSQATITCPHCQSGFIEEIRADATPRHRLSPFPDDHLSLRRQGLRRRRRDAAGNRSPFNPVIVLRGPGDDSAAEHDGPSTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTIEIGDAQVETDTHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENHFPVVYTEMDGGLNTNGAPRRISRSVRSNRVRESRGFGRVIRNFFSFFGRIGSRNSSSSLSSSEHVSVSRSRSHVSSVFNRNSYCK* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00593 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 224 - -
Lapu11g00593 352 MobiDBLite consensus disorder prediction 67 99 - -
Lapu11g00593 352 SUPERFAMILY RING/U-box 159 227 - -
Lapu11g00593 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
Lapu11g00593 352 FunFam E3 ubiquitin-protein ligase RING1-like 141 226 - -
Lapu11g00593 352 Pfam Ring finger domain 178 220 IPR001841 -
Lapu11g00593 352 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Lapu11g00593 352 CDD RING-H2_RNF126-like 179 220 - -
Lapu11g00593 352 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Lapu11g00593 352 SMART ring_2 179 219 IPR001841 -
Lapu11g00593 352 Pfam Protein of unknown function (DUF1117) 240 348 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00593 Lapu-Chr11 9203406 9204576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00593 118 226 C3H Transcription Factor Family AT5G01980 44.954 1.13e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00593 K11982 - gmx:100792874 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00356 5 2949535 2950932 Lapu11g00593 11 9203406 9204576 PCT