Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00579 ATGATAGAAAAGTTAAAAAATTCCAAAAACTGCCCCTGCACTGGAACATGTCACTACCCAGTGCTGCCCTGCTCCATAAGTACTCCACCCTCTCTCACGGACCAATCGCATCTCATAACTGTTTTCAACTTCCAGAGTGAAAGCAAAGCAAAGATGGCAGTGCCAAACATTTTTCTCTGCATTGTGTTCATCATCTCCTTCACATGGACGGCTGAAGCACGAATCCCAGGGATTTACTCTGGCGGTGCATGGGAAAGTGCCCACGCTACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCATGTGGGTATGGGAACCTGTACAGCCAGGGCTACGGTGTGAACACGGCGGCATTGAGCACGGCGCTTTTCAACAATGGCCTTAGCTGCGGCGCCTGCTTCGAGATAAAGTGCGCAAACGATAAACAGTGGTGTCACTCCGGAAGTCCTTCCATCTTCATCACCGCAACAAACTTTTGCCCTCCCAACTACGCCCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATTGCCGAATACCGCGCCGGAATTGTCCCTGTTGCCTTTCGCCGGGTGCCATGTAGAAAGCACGGAGGGATAAGGTTCACCGTCAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAATGTGGCGGGTGCGGGGGATGTCGTGCGCACTTACGTGAAGGGGTCCAGAACCGGTTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCGAACGCGGTTTTGGTGGGTCAGGCGCTGTCGTTTCGCGTCACGGGCAGCGACCGCCGCACCTCCACCTCGTGGAACATCGCTCCACCCAATTGGCAGTTCGGTCAAACTTTCACTGGAAAAAATTTCCGAGTCTGA 933 0.5391 MIEKLKNSKNCPCTGTCHYPVLPCSISTPPSLTDQSHLITVFNFQSESKAKMAVPNIFLCIVFIISFTWTAEARIPGIYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDVVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00579 310 Pfam Expansin C-terminal domain 217 294 IPR007117 -
Lapu11g00579 310 PRINTS Expansin signature 155 165 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 215 227 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 141 152 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 262 283 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 114 128 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 227 248 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 291 307 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 191 204 IPR002963 GO:0009664
Lapu11g00579 310 PRINTS Expansin signature 174 191 IPR002963 GO:0009664
Lapu11g00579 310 SMART dpbb_1 119 206 IPR007112 -
Lapu11g00579 310 FunFam Expansin 73 212 - -
Lapu11g00579 310 FunFam Expansin 216 308 - -
Lapu11g00579 310 Gene3D - 73 212 IPR036908 -
Lapu11g00579 310 CDD DPBB_EXPA_N 84 211 - -
Lapu11g00579 310 Gene3D - 216 308 IPR036749 -
Lapu11g00579 310 SUPERFAMILY Barwin-like endoglucanases 62 234 IPR036908 -
Lapu11g00579 310 PRINTS Expansin/Lol pI family signature 123 141 IPR007118 GO:0005576
Lapu11g00579 310 PRINTS Expansin/Lol pI family signature 199 215 IPR007118 GO:0005576
Lapu11g00579 310 PRINTS Expansin/Lol pI family signature 101 119 IPR007118 GO:0005576
Lapu11g00579 310 PRINTS Expansin/Lol pI family signature 291 305 IPR007118 GO:0005576
Lapu11g00579 310 PRINTS Expansin/Lol pI family signature 83 98 IPR007118 GO:0005576
Lapu11g00579 310 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Lapu11g00579 310 Pfam Lytic transglycolase 119 205 IPR009009 -
Lapu11g00579 310 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 102 216 IPR007112 -
Lapu11g00579 310 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 226 305 IPR007117 -
Lapu11g00579 310 PANTHER EXPANSIN-A15 62 308 IPR002963 GO:0009664
Lapu11g00579 310 SUPERFAMILY PHL pollen allergen 213 305 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00579 Lapu-Chr11 9094205 9096767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00579 52 310 Expansin Gene Family AT2G39700 83.398 7.44e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00579 - - gmx:100809139 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00370 5 3072388 3074077 Lapu11g00579 11 9094205 9096767 PCT