Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00578 ATGAAGTGCTTCTACTTCTCCAACGCAGAGGACGAAGATTGCGTGGCAGCGGCACCGAGTTCGCGCGGTTCCACTTCGCGCGTGTCGTGGGCGCGTTCGCTAAGTCTCATGGACACGCGCAGCCGCTCCAACTTCGACTCCGACTCCACGGAATTCTCCGACACGGTGGACTTCCACCACTTCCTGGTCCAGCGCCGCGCCAACGACCTCCGACTCTTCCCCTTCTCCGCGCTGAAGTGCGCCACGCGCGGGTTCAGCCGCGCGCTTCTCGTCGGCGAGGGGGGATTCGGGTCCGTGTACCGCGGCGTGGTGGAGGAAAAGGAGGTGGCGATCAAGCAGCTGAACCGCAACGGGCAGCAGGGGCACAAGGAGTGGATCAACGAGGTGAATTTGTTGGGAGTGGTTAAGCACCCTAATCTGGTGCGGTTGGTAGGGTACTGTGCTGAGGACGATGAAAGAGGGATTCAGAGGCTTCTGGTTTACGAGTTTATGCCGAATAAGAGCTTGGAGGAGCATCTCTTGGCGCGAGTTCCTTCCACGGTTCTGCCTTGGGGGACCAGGTTGAGAATTGCGCAAGATGCGGCTCGCGGTTTGGCTTATCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACGTCCAACATCCTGCTGGATGAGAATTTCAATGCAAAGCTTTCTGATTTTGGACTGGCTAGGCAAGGACCTTCAGAAGGGTCTGGCTATGTTTCAACAGCAGTTGTTGGCACTATAGGTTATGCTGCACCAGAGTATGTTCAGACTGGTAAGCTAACTGCTAAAAGTGATGTGTGGAGCTATGGTGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCTGTAGAGAGAAACCTACCTAAAAATGAACAGAAGCTTTTAGAGTGGGTTAGACCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACCCCCGACTTGAGAGACAATACTGCATCAAATCAGCTCATAAACTTGCAATCCTAGCAAACAAGTGCCTCATGAAACAGCCAAAGTGTCGCCCAAAAATGAGTGAGGTTGTTGAGTCTCTTGGAAGCATTATTATTGAGACAGATACTCGGGATGAATGCTTCCCTCAAGCTGCTGTAGCCTCTGGAGAAGAAAAAGAAGAGAAGGTATCTCTTGAGGAAACTGAACCGGAACCAGCTAAACAAGGGAACAATTACCTGAAGAAGGTTTTTGAATTCAAAGACATGGTCAGCTTAAGAAACAAGTCTATTGGAAGGTTGGACTGGAGAAGTTGGGCGCCTGGGCTAGTAAGAAGTTGGTGA 1320 0.5045 MKCFYFSNAEDEDCVAAAPSSRGSTSRVSWARSLSLMDTRSRSNFDSDSTEFSDTVDFHHFLVQRRANDLRLFPFSALKCATRGFSRALLVGEGGFGSVYRGVVEEKEVAIKQLNRNGQQGHKEWINEVNLLGVVKHPNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEEHLLARVPSTVLPWGTRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSYGVVLYELITGRRAVERNLPKNEQKLLEWVRPYVSDPRKFHHIVDPRLERQYCIKSAHKLAILANKCLMKQPKCRPKMSEVVESLGSIIIETDTRDECFPQAAVASGEEKEEKVSLEETEPEPAKQGNNYLKKVFEFKDMVSLRNKSIGRLDWRSWAPGLVRSW* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00578 439 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Lapu11g00578 439 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Lapu11g00578 439 Gene3D Phosphorylase Kinase; domain 1 64 163 - -
Lapu11g00578 439 PANTHER OS01G0588500 PROTEIN-RELATED 50 362 - -
Lapu11g00578 439 Gene3D Transferase(Phosphotransferase) domain 1 164 379 - -
Lapu11g00578 439 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 164 373 - -
Lapu11g00578 439 ProSiteProfiles Protein kinase domain profile. 85 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00578 439 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 59 163 - -
Lapu11g00578 439 CDD STKc_IRAK 91 363 - -
Lapu11g00578 439 Pfam Protein kinase domain 90 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00578 Lapu-Chr11 9086690 9089689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00578 71 361 Glycoside Hydrolase AT3G07070 50.680 4.40e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu11g00578 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00578 - - gmx:100305425 760.755