Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00573 ATGCCTTCTAACGCTCTACACTTCTCAACTCAACCACCCCACCTCATGGCCATGGATGAGTATGATGAATGTGATGAGAAGGTCCACGTGGCAGTTGGAAAGTCCCTTAAGAAAGCCACCACTTTAATTCGATGGTGTTTCACCCATTTCAGCAGAGCAGAGATATGCTTACTTCATGTTTACCAACCTTCTACTATGATCCCTACACTACTAGGAAAATTGCCAGCATCTCAAGCTAGTCCTGAAGTTGTGTCTGCTTATAGAATAGAGGAAGGAGAAGCGACCAAGAGGCTTCTGGAGAAATACTCGAGCCTTTGCCGTGCAGCTAAGGTTAAGGTAAGTAGTGTTGTTGGTGAAGCTGATCAAGTTCACAAAGGGATTGTAGATTTCGTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCAATAACCCCAGTAAATTGCATGAAAGTCAAAAGGAATTCCAGTAAAGCAAATTTTACTGCAAGAAATGCTCCCCCATTCTGCGAAATATGGTTTGTCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCCTTGTTCTGTGTCTTCCCATGCTCAACCTGAGACTACTACGGCAGAGAGCTTGAGTTGTAGATCTTTTCAATATGGTACAAGTGAATCATTCCCTTCAGAATGTCTTCAATCAAATTCTACCAGGACTACGAGAAGTACAGTTCAGAATGAAATCATTGAAGGAGAAGCAACTTCTTCATCCAAATCATCCAGTTGTAATAGTCATTGTTCTCCCCAAAATTCAGCTAGTTGGTACGTAGATACTCATTCAGAGTTTGAGGAAGAAACAATAGGTAGTCAACTTATTGAAGCTGATTCTGCAACAGACAAGGCCCTTGTGGAGCTGTTGAAGTGCAAAAGATTGGAATTCAAAGCCATTGAGGCCATTAGTAAGGTCAACTTTTTTGAATCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGTTGAGGATGCAGTGAGAGCTACAATACAGGAGCAACGGACGTTATTGGAGGAGAAAGAAGAAATTGCTAGTGAAGTGGAAAGGACCACAAGAAGTATTTCCCTTCTAGGAAATTGTGCACATGAAATCAACAGTAAGCGAGACGAAGCTGCAAATGAACTATCACTAATTCAAGCATCCTTCTCAAACCTGCAGCATGAAAAGCAGGAAATCAGACGACAGAAAATGGAAGCCCTACACTGGCTTGAGCGGTGGAAAAGTTGTGAACATGTTGGAGCAGATCATTGCAATGGGATCATTGGATTTGCCGATGAATTTCCGGAGTTGGCAGAATTTTCATTATCAGATCTTCAAAACGCTACGTGCAATTTTTCTGAGAGTTTCAAAGCTATGGAGGGTGGATATGGTTCCATTTACAAGGGAGAAATGTTAGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCAACAGAGTTTCATCAAGAGGTTCGAGTTCTTGGTAGACTTCAGCACCCTAATCTGGTTACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCATTTGTATACGAGTACTATCCCAATGGAAGTCTTCAAGATTATCTATCCCGAAAAGTAAGTGTTCTTCCTTTGACATGGAGTATCCGAGCACGATGGATTTCTGAAATTGCTAGAGCTCTCTGCTTCCTACATTCTTCCAGACCTGAAACTATTATCCACGGTGGTCTGACACTTGAAACTGTCCTTCTTGACACTGGACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGAAAGAGGGGTCACTTTCTCTTCCTAGTTTTCACTTAAGCACTGAGCCAAAAGGTTCTTTTACATATACAGATCCTGAGCTTCAGAGAACTGGAGTACTAACACCTAAGTCTGACATATACTCTTTTGGACTCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTAGGATTAGCTGGTGAAGTACGCAGAGCAGTTTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGAATTCCACCGCGGCAACAAGATTGGCTGAACTGGGATTGCAGTGCTGCCAACTCAACAGTAGGGACAGACCAGAGTTAACACCTTCTCTAGTGAGGGAACTGGAGCAGTTGTACGTTTCAGTAGAGCGACCAGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAGATAATGCTTGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGCTGGAAAACGGGCACGAAACTTCTCCTATGACTAATTTAAAGTTGAGTTACCTGCATCTCACTCCCAATCATGCACTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 2400 0.425 MPSNALHFSTQPPHLMAMDEYDECDEKVHVAVGKSLKKATTLIRWCFTHFSRAEICLLHVYQPSTMIPTLLGKLPASQASPEVVSAYRIEEGEATKRLLEKYSSLCRAAKVKVSSVVGEADQVHKGIVDFVTVHNIRKLVIGAITPVNCMKVKRNSSKANFTARNAPPFCEIWFVYKGKHIWTREASETPCSVSSHAQPETTTAESLSCRSFQYGTSESFPSECLQSNSTRTTRSTVQNEIIEGEATSSSKSSSCNSHCSPQNSASWYVDTHSEFEEETIGSQLIEADSATDKALVELLKCKRLEFKAIEAISKVNFFESAHAHEVKLRKEVEDAVRATIQEQRTLLEEKEEIASEVERTTRSISLLGNCAHEINSKRDEAANELSLIQASFSNLQHEKQEIRRQKMEALHWLERWKSCEHVGADHCNGIIGFADEFPELAEFSLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSTEFHQEVRVLGRLQHPNLVTLLGVCPEAWSFVYEYYPNGSLQDYLSRKVSVLPLTWSIRARWISEIARALCFLHSSRPETIIHGGLTLETVLLDTGLSCKICEFGFSRLVKEGSLSLPSFHLSTEPKGSFTYTDPELQRTGVLTPKSDIYSFGLIILQLLTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNSTAATRLAELGLQCCQLNSRDRPELTPSLVRELEQLYVSVERPVPSFFLCPIFQEIMLDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00573 799 CDD RING-Ubox_WDSUB1-like 730 785 - -
Lapu11g00573 799 Gene3D Phosphorylase Kinase; domain 1 433 527 - -
Lapu11g00573 799 SMART Ubox_2 732 795 IPR003613 GO:0004842|GO:0016567
Lapu11g00573 799 PANTHER OS02G0152300 PROTEIN 28 793 - -
Lapu11g00573 799 MobiDBLite consensus disorder prediction 217 236 - -
Lapu11g00573 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 799 IPR013083 -
Lapu11g00573 799 SUPERFAMILY RING/U-box 725 798 - -
Lapu11g00573 799 Gene3D HUPs 23 143 IPR014729 -
Lapu11g00573 799 SUPERFAMILY Protein kinase-like (PK-like) 440 715 IPR011009 -
Lapu11g00573 799 Pfam U-box domain 729 798 IPR003613 GO:0004842|GO:0016567
Lapu11g00573 799 ProSiteProfiles U-box domain profile. 728 799 IPR003613 GO:0004842|GO:0016567
Lapu11g00573 799 Coils Coil 340 360 - -
Lapu11g00573 799 CDD STK_N 27 178 - -
Lapu11g00573 799 Gene3D Transferase(Phosphotransferase) domain 1 528 727 - -
Lapu11g00573 799 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 143 - -
Lapu11g00573 799 ProSiteProfiles Protein kinase domain profile. 455 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00573 799 Pfam Protein tyrosine and serine/threonine kinase 463 711 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00573 Lapu-Chr11 9046412 9057378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00573 25 796 U-box Gene Family AT2G45910 36.160 8.84e-156 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu11g00573 PK_Tyr_Ser-Thr 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00573 - - gmx:100799032 1330.08