Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00570 ATGGAGGGTGAGAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGGTAGCGAGCATCTCCGATTACAGGCCTCCTGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGCTGATCCCGATGTTCGAGGAGATTAGGGAAATGAAAGACACGATCCCCGAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAGGCTCTGGAATCCGCCAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGGAATTATGAATAAATTCTACGAGGTGACAGCTCGGTTGGAACAATCATTGGGTGGTATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTACGAGGATATGTTGTCCCTCTACGACAACAGCAATGATGCAGCTATAGATCCATCTGTTCTAAGTCGATTAGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCACTTGCTTTGCATGAGATGGTGGCATCAAGTGGTGGGGATCCTGGGGCACGCATCGAGAAAATAGCGATGTTACTGAAGAAGATAAAGGATTACGTTCAAACAGAAAATCTAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTTCAAAAGTGTATGGAGTTGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCAATTTCCCTGGAATTAATGAAGGATCCTGTCATTGTTTCAACCGGACAGACTTACGAGCGATCTTGTATTGAGAAATGGTTGCAAGAAGGGCATGGGACATGCCCCAAAACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTGTTACGAAGTCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCTAAACGACCCAGCAGTTCACAACCTAGTAAATCAACATCAGCCTACTCACCTGCTGAGCGAAGTAAGATCGACGGTCTTCTGCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCGGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATCGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTCTTGTCCGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATTGTCTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCGCGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGATCTTCAGGAGCCATACCTCCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGAAACAAGGGGAAGGCAGTAAGGGCTGGCGTTATTCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCTATTTTAGCAATACTGGCTAGCCATCCTGAAGGGAAGAATACCATTAGAGCTGCAGAGGCAGTGCCAGTTTTAGTAGAGTTTATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCGGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTAGCACAGGCTCAAGAACTGGGGGTGATGGCTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTACTGGAGCGTATGAGCAGGTTACTTGAGCAACAGCAGGAAATTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGATACCCAACTTCCTTTGATTACTAACCCCGATGATTCCTAA 1983 0.4655 MEGENASKVIELVNEVASISDYRPPVKKQYCNLARRLKLLIPMFEEIREMKDTIPEDTSKAVLAFKEALESARELLRFGSEGSKLYLVLERDGIMNKFYEVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSLYDNSNDAAIDPSVLSRLAEKLQLMGIADLTQESLALHEMVASSGGDPGARIEKIAMLLKKIKDYVQTENLVKDDNLGGKGIFSKVYGVGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQEGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSTSAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKNTIRAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMAPLLELAQNGTDRGKRKAAQLLERMSRLLEQQQEIPTQTETQAQNEDTQLPLITNPDDS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00570 660 SUPERFAMILY RING/U-box 246 331 - -
Lapu11g00570 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Lapu11g00570 660 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Lapu11g00570 660 Gene3D - 4 114 IPR036537 GO:0007166
Lapu11g00570 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Lapu11g00570 660 FunFam RING-type E3 ubiquitin transferase 336 429 - -
Lapu11g00570 660 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Lapu11g00570 660 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Lapu11g00570 660 MobiDBLite consensus disorder prediction 327 349 - -
Lapu11g00570 660 MobiDBLite consensus disorder prediction 635 660 - -
Lapu11g00570 660 FunFam RING-type E3 ubiquitin transferase 530 647 - -
Lapu11g00570 660 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Lapu11g00570 660 Coils Coil 616 636 - -
Lapu11g00570 660 CDD MLKL_NTD 6 135 - -
Lapu11g00570 660 SMART arm_5 423 463 IPR000225 GO:0005515
Lapu11g00570 660 SMART arm_5 464 504 IPR000225 GO:0005515
Lapu11g00570 660 SMART arm_5 505 545 IPR000225 GO:0005515
Lapu11g00570 660 SMART arm_5 588 628 IPR000225 GO:0005515
Lapu11g00570 660 SMART arm_5 546 586 IPR000225 GO:0005515
Lapu11g00570 660 SMART arm_5 382 422 IPR000225 GO:0005515
Lapu11g00570 660 MobiDBLite consensus disorder prediction 330 348 - -
Lapu11g00570 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Lapu11g00570 660 CDD RING-Ubox_PUB 256 308 IPR045210 -
Lapu11g00570 660 PANTHER U BOX DOMAIN-CONTAINING 25 628 - -
Lapu11g00570 660 SUPERFAMILY ARM repeat 353 632 IPR016024 -
Lapu11g00570 660 Pfam Neurochondrin 517 646 IPR008709 -
Lapu11g00570 660 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Lapu11g00570 660 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Lapu11g00570 660 FunFam RING-type E3 ubiquitin transferase 430 529 - -
Lapu11g00570 660 Gene3D - 341 651 IPR011989 -
Lapu11g00570 660 FunFam RING-type E3 ubiquitin transferase 255 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00570 Lapu-Chr11 9011715 9016455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00570 1 649 U-box Gene Family AT3G46510 70.030 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00570 - - gmx:100812160 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00570 11 9011715 9016455 Lapu11g00570 11 9011715 9016455 ECH