Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00569 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAGCCAAACCATCCTCAAGCCAATGGCAGTGATAACACTCAGCTGCTTCCACCTTTGCCTCCGCAGCAGACTCATGTGGGAGGTTCTGTGGGATCAATCAGGCCAGGTTCTATGGCTGATCGAGCTAGGCTAGCTAAGATACCTCCTCCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACTAAATTTTGCTATTTCAACAACTATAGCCTCTCTCAACCACGCCACTTCTGCAAGACTTGTAGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGGTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCTGCATCATCTGAGAAACAAACACTCTCTGGTTCTTCTGGTGCACTCCCCTCTGGTGGAACCACTCACGAGCTCATAGGACAGTTGCCACAACCATCGAACCTTCCCTTCATGGCATCCCTCCAGAACCTGAACCGTTATGCTGTTGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGGTTTCAAATTGGTGGCAGTGGTAATTCCTCTGCTGGTGGAGGAATGGATCAGTGGCGCTTGCAGCAGATTCCTTTCTTGAATAGTTTTGAATCAGCTTCAGCTGGTTCATACCATTTTCAAAATGAAAGTATTGAAACACCTTCTGGTTTGGTTGGAGATTTAGCAACAAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAATGGAGCTTTGAATTTGTCAAGATCACCTCTGAACGTCTCAGAAAATAACCACTACTATTCATGGACTGATATGTCAGGTCTTTCCTCTTCTTCCGCTAGTCATCTCTTGTAA 924 0.4675 MVFSSIPVFVDPPNWQQQPNHPQANGSDNTQLLPPLPPQQTHVGGSVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSEKQTLSGSSGALPSGGTTHELIGQLPQPSNLPFMASLQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGSGNSSAGGGMDQWRLQQIPFLNSFESASAGSYHFQNESIETPSGLVGDLATNSRVSQMPSVKMEENGALNLSRSPLNVSENNHYYSWTDMSGLSSSSASHLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00569 307 MobiDBLite consensus disorder prediction 11 47 - -
Lapu11g00569 307 MobiDBLite consensus disorder prediction 135 162 - -
Lapu11g00569 307 MobiDBLite consensus disorder prediction 11 53 - -
Lapu11g00569 307 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Lapu11g00569 307 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Lapu11g00569 307 MobiDBLite consensus disorder prediction 115 162 - -
Lapu11g00569 307 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Lapu11g00569 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 230 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00569 Lapu-Chr11 9002360 9006453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00569 38 306 C2C2-Dof Transcription Factor Family AT3G55370 43.813 2.48e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu11g00569 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00569 - - gmx:100816635 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00384 5 3186973 3188682 Lapu11g00569 11 9002360 9006453 PCT